Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C10
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       30   3.0  
03_02_0738 - 10824121-10825572                                         29   3.9  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   3.9  
05_01_0142 - 940421-940701,941262-941574                               29   5.2  
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800...    29   5.2  
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640...    29   5.2  
03_01_0023 + 198414-198968                                             29   6.9  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPPS 226
           P L     F P P  +P PP P  P    PPS
Sbjct: 302 PQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPS 333


>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPPS 226
           PP   P    P P  FP PP P  P +  PP+
Sbjct: 78  PPPPSPPSSSPPPLSFPPPPPP--PSSPPPPA 107


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 134 PLXXPXXFXPXPXGFPXPPXPSXPGAXXPPSRI 232
           P+  P    P P G   PP P  P A  PP  I
Sbjct: 288 PMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSI 320



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 128 GPPLXXPXXFXPXPXGFPXPPXPSXPGAXXP 220
           GPP   P    P P   P PP P+ P    P
Sbjct: 263 GPPRPPPPQVPPPPPQAPPPPPPNAPMGMPP 293


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +2

Query: 146 PXXFXPXPXGFPXPP--XPSXPGAXXPP 223
           P  + P P  +P PP   P  PGA  PP
Sbjct: 37  PQGYPPPPGAYPPPPGAYPPPPGAYPPP 64


>03_05_0690 +
           26778567-26778804,26778950-26779024,26779995-26780099,
           26780869-26781000,26781432-26781571,26782213-26782323,
           26782690-26782812,26784166-26784267,26784536-26784546,
           26784878-26785103,26785363-26785401,26785413-26785583,
           26785674-26785753,26785976-26786039
          Length = 538

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 237 HRIRDGG*XAPGXXGXGGXGXPXGXGXKXQGXNSGGP 127
           HR R GG    G  G GG G   G      G   GGP
Sbjct: 9   HRGRGGGGGGGGGGGGGGGGGGVGGDRGGGGSGGGGP 45


>03_05_0688 +
           26762668-26762893,26763027-26763101,26763865-26764032,
           26764983-26765114,26765538-26765677,26765840-26765908,
           26766325-26766435,26766854-26766973,26768223-26768324,
           26769608-26769778,26769865-26769944,26770119-26770182
          Length = 485

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 249 DVXXHRIRDGG*XAPGXXGXGGXG-XPXGXGXKXQGXNSG 133
           D   HR RDGG    G  G GG G  P G G    G   G
Sbjct: 5   DKGRHRGRDGGGGGGGGGGGGGGGVDPAGGGSGGGGPGMG 44


>03_01_0023 + 198414-198968
          Length = 184

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 222 GG*XAPGXXGXGGXGXPXGXGXKXQGXNSGG 130
           G   +PG  G GG G   G G +  G  SGG
Sbjct: 30  GSCPSPGGGGGGGGGGGGGGGGRGGGGGSGG 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,368
Number of Sequences: 37544
Number of extensions: 210536
Number of successful extensions: 783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)