Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C10
(923 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 0.88
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.5
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.2
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPPSRIRWXC 244
PP P F P P P PP P P PP R C
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSC 93
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
PP P F P P P PP P P PP
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
PP+ P P P P PP P P PP
Sbjct: 48 PPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 128 GPPLXXPXXFXPXPXGFPXPPXPSXPGAXXPPS 226
GPP+ P P P FP P P P PPS
Sbjct: 108 GPPMPTPM---PFPQHFPFPGMPPMPSGPPPPS 137
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 128 GPPLXXPXXFXPXPXGFPXPPXPSXPGAXXPPS 226
GPP+ P P P FP P P P PPS
Sbjct: 108 GPPMPTPM---PFPQHFPFPGMPPMPSGPPPPS 137
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Frame = +2
Query: 125 FGPP--LXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
F PP P F P P F P P PG PP
Sbjct: 378 FAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPP 412
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +2
Query: 125 FGPPLXXPXXFXPXPXGFP---XPPXPSXPGAXXPP 223
+GPP P F P P G P PP P PP
Sbjct: 423 YGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPP 458
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
PP P P P G P P P P PP
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 128 GPPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
GPP P P G P PP P G PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 128 GPPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
GPP P P G P PP P G PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 131 PPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
PP P P P G P P P P PP
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 128 GPPLXXPXXFXPXPXGFPXPPXPSXPGAXXPP 223
GPP P P G P PP P G PP
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,319,842
Number of Sequences: 27780
Number of extensions: 142932
Number of successful extensions: 484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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