Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C09
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 33 0.38
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.66
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.66
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.0
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 4.6
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/62 (33%), Positives = 23/62 (37%)
Frame = +2
Query: 512 NPGAXGXRXXXGXXPPPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPP 691
+PG G G PP G G KPG K + P K P P GPP
Sbjct: 181 SPGTDGYPGRPGEMGPP-GPPGDDGKPGSNGEKGQDV---EQPTPRKGPRGPPGDSGPPG 236
Query: 692 PE 697
PE
Sbjct: 237 PE 238
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Frame = -3
Query: 594 PGFXGXPXXPX-GGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXP 418
PG G P P GGG P P P G G + P G GGG P
Sbjct: 166 PGSDGQPGRPATGGGAAP--RPGPPGPKGPRGAPGNSGRAGAPGQPGNDAHGYGGGVGAP 223
Query: 417 PPXPXXXPXXXXXXXNXFXGXXXXPKXPKG 328
P G P PKG
Sbjct: 224 GPAGPRGAPGPAGHPGSSGGGRPGPAGPKG 253
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
PG G P P G P P P + G G P P P G G PP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYP---PPPPSRPPAPPSGHGMIPPP 384
Query: 414 PXP 406
P P
Sbjct: 385 PPP 387
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Frame = +1
Query: 553 PPXXGGXGXXPKTGXX-PXKXXXPKXPKXAXNPKKAXXPXPXQRPPPPXXXFKKXAPP 723
PP GG P G P P P+ P P RPP P PP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
PG P P G P P PG G G P P G GG PP
Sbjct: 281 PGMTPRPPPPPSSGMWP--PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338
Query: 414 P 412
P
Sbjct: 339 P 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
PG G P P G P P P + G G P P P G G PP
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYP---PPPPSRPPAPPSGHGMIPPP 394
Query: 414 PXP 406
P P
Sbjct: 395 PPP 397
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Frame = +1
Query: 553 PPXXGGXGXXPKTGXX-PXKXXXPKXPKXAXNPKKAXXPXPXQRPPPPXXXFKKXAPP 723
PP GG P G P P P+ P P RPP P PP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
PG P P G P P PG G G P P G GG PP
Sbjct: 291 PGMTPRPPPPPSSGMWP--PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348
Query: 414 P 412
P
Sbjct: 349 P 349
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Frame = +1
Query: 547 GXPPXXGG-------XGXXPKTGXXPXKXXXPKXPKXAXNPKKAXXP---XPXQRPPPPX 696
G PP GG G P TG P P + P P P PPPP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 697 XXFKKXAPP 723
FK PP
Sbjct: 778 GGFKGGPPP 786
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
P G P P G P P P GG P P GG GG PP
Sbjct: 707 PPITGGPPPPPG--LPPITGGPPPPP--PPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Query: 414 PXPXXXP 394
P P P
Sbjct: 763 PPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Frame = +1
Query: 547 GXPPXXGG-------XGXXPKTGXXPXKXXXPKXPKXAXNPKKAXXP---XPXQRPPPPX 696
G PP GG G P TG P P + P P P PPPP
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Query: 697 XXFKKXAPP 723
FK PP
Sbjct: 778 GGFKGGPPP 786
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
P G P P G P P P GG P P GG GG PP
Sbjct: 707 PPITGGPPPPPG--LPPITGGPPPPP--PPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
Query: 414 PXPXXXP 394
P P P
Sbjct: 763 PPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Frame = +1
Query: 547 GXPPXXGG-------XGXXPKTGXXPXKXXXPKXPKXAXNPKKAXXP---XPXQRPPPPX 696
G PP GG G P TG P P + P P P PPPP
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Query: 697 XXFKKXAPP 723
FK PP
Sbjct: 361 GGFKGGPPP 369
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
P G P P G P P P GG P P GG GG PP
Sbjct: 290 PPITGGPPPPPG--LPPITGGPPPPP--PPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
Query: 414 PXPXXXP 394
P P P
Sbjct: 346 PPPGGCP 352
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
P P P GG P P P RG P P P+ GG G PP
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPP---PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Query: 414 P 412
P
Sbjct: 332 P 332
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +2
Query: 557 PPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPPPEXXLKRXPPP 724
PP G P P P P P PPPP PPP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +2
Query: 545 GXXPPPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPPPEXXLKRXPPP 724
G PPP G P G P P P PPPP PPP
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG--SPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
P P P GG P P P RG P P P+ GG G PP
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPP---PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Query: 414 P 412
P
Sbjct: 353 P 353
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +2
Query: 557 PPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPPPEXXLKRXPPP 724
PP G P P P P P PPPP PPP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +2
Query: 545 GXXPPPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPPPEXXLKRXPPP 724
G PPP G P G P P P PPPP PPP
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG--SPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -3
Query: 594 PGFXGXPXXPXGGGXXPFXXRXPXAPGFXXGGRGXXPKXXXPXPRGGGXFXXGGGXXXPP 415
P P P GG P P P RG P P P+ GG G PP
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPP---PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Query: 414 P 412
P
Sbjct: 338 P 338
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +2
Query: 557 PPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPPPEXXLKRXPPP 724
PP G P P P P P PPPP PPP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +2
Query: 545 GXXPPPXGXXGXPXKPGXXXXKXXXXXXQKXPXTXKRPXXPXXXKGPPPPEXXLKRXPPP 724
G PPP G P G P P P PPPP PPP
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG--SPPPP 298
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +1
Query: 583 PKTGXXPXKXXXPKXPKXAXNPKKAXXPXPXQRPPPPXXXFKKXAPPXXXXEXXXKNXTP 762
PK P PK PK NPK P P P P K P N P
Sbjct: 179 PKPDPKPKPKPKPK-PKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNP 237
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +1
Query: 583 PKTGXXPXKXXXPKX-PKXAXNPKKAXXPXPXQRPPPPXXXFKKXAPPXXXXEXXXKNXT 759
PK P PK PK PK P P + P F K P KN
Sbjct: 236 PKPMPIPKPMPFPKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLKPKTKPKKNPV 295
Query: 760 PDL 768
P L
Sbjct: 296 PIL 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.141 0.473
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,300
Number of Sequences: 27780
Number of extensions: 159908
Number of successful extensions: 749
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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