Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C07
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 33 0.20
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.35
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 31 1.1
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 31 1.4
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 30 1.9
01_01_0082 + 625198-625719 30 2.5
12_01_0077 - 637470-638114 29 5.7
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 5.7
02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108 29 5.7
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 7.5
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.9
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Frame = -3
Query: 646 GGGXPXXFFXGXTPRGXXPPPFXXFPPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRPP 467
G G P + G G PPP+ P +PP P K + GGG P
Sbjct: 9 GSGYP---YGGAGGYGAPPPPYGSSPAPSAPPYGEKPPKEGKTSSSSAPYYGGGGGYGAP 65
Query: 466 LSQXPI--XGEXGXPDXXXXPXGFXG 395
S P G G P P + G
Sbjct: 66 PSTQPYGSGGGYGAPPSTQRPQSYGG 91
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -3
Query: 607 PRGXXPPPFXXFPPXFSP-----PPXXXXPGXKKXXAGXGXSXXRGGGXRPP 467
P+G PPP PP P PP PG KK G +GG RPP
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK--GGPPPPPPKGGASRPP 390
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Frame = +1
Query: 415 GXXCPGNLVPXKXGXGXXGVXXPX----PXGXXPPXPLFXFXNPGXXXGGGGKKXGEXKX 582
G P +V G G P P G P P G GGGGKK G+
Sbjct: 167 GGGSPKTMVAGDGQGGGAGAVAPPFAMTPHGKQPVAPPGNGNGGGGGGGGGGKKKGKKGG 226
Query: 583 KGGG 594
GGG
Sbjct: 227 GGGG 230
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/91 (26%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Frame = -3
Query: 643 GGXPXXFFXGXTPRGXXPPPFXXFPPXFSPPPXXXXP----GXKKXXAGXGXSXXRGGGX 476
GG P G P G P PP F PP G A G S GG
Sbjct: 138 GGPPSAMSQGPLPFGGPPAAVASQPPPFGGPPVAAAQPPPFGRPPSAAAAGQSAPLGGAL 197
Query: 475 RPPLSQXPIXGEXGXPDXXXXPXGFXGPXXG 383
P G G G P G
Sbjct: 198 FAAAQPPPFGGPPGAAPQPAPTGGLRTPYGG 228
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = -3
Query: 556 PPPXXXXPGXKKXXAGXGXSXXRGGGXRPPLSQXPIXGEXGXPDXXXXPXG 404
PPP PG A G GG P Q P G P P G
Sbjct: 203 PPPFGGPPGAAPQPAPTGGLRTPYGGPPAPSQQVPFGGAPQWPGTQPPPFG 253
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/71 (28%), Positives = 24/71 (33%)
Frame = -3
Query: 646 GGGXPXXFFXGXTPRGXXPPPFXXFPPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRPP 467
G G P + G G PPP+ P +PP P K + GGG P
Sbjct: 9 GSGYP---YGGAGGYGAPPPPYGSSPAPSAPPYGAKPPKEGKTSSSSAPYYGGGGGYGAP 65
Query: 466 LSQXPIXGEXG 434
S P G
Sbjct: 66 PSTQPYGSGGG 76
>01_01_0082 + 625198-625719
Length = 173
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/67 (31%), Positives = 22/67 (32%)
Frame = -3
Query: 610 TPRGXXPPPFXXFPPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRPPLSQXPIXGEXGX 431
TP PPP +PP SPPP P GGG P S P G
Sbjct: 61 TPVYYPPPPPVYYPPP-SPPPVAYPP-PTTPSTNCPPPPYGGGGYNPTPSYNPTPGYNPT 118
Query: 430 PDXXXXP 410
P P
Sbjct: 119 PSGWFTP 125
>12_01_0077 - 637470-638114
Length = 214
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = -3
Query: 556 PPPXXXXPGXKKXXAGXGXSXXRGGGXRPPLSQXPIXGEXGXPDXXXXPXGFXGPXXG 383
PPP PG K GGG PP G G D GF G G
Sbjct: 86 PPPLPGMPGIKVPGGVVCDDLPHGGGSEPPAGGD--SGRAGTDDDDGGGDGFGGAARG 141
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/87 (27%), Positives = 25/87 (28%)
Frame = +3
Query: 384 PXFGPXXPXGXXXXSGXPXSPKXGXWXXGGLXPPPLWXEXPXPAXXFXXPGXXXXGGGEK 563
P GP P G SG P G G P P + A PG GG
Sbjct: 163 PQMGPPPPYG----SGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGGYDPGYGGMGGASG 218
Query: 564 XGGKXXKGGGXXPRGVXPXKKXXGXPP 644
GG G GV G P
Sbjct: 219 GGGGGGYAPGYGGMGVGDGGSGGGYEP 245
>02_02_0029 + 6204557-6204734,6205105-6205207,6205970-6206108
Length = 139
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 592 PPPFXXFPPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRPPLSQXPI 449
PPP FPP ++PP G G G GGG + + PI
Sbjct: 37 PPPPPFFPPQWAPP---VAGGGGPFAGGGGYGSGAGGGGPGGVHEPPI 81
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 592 PPPFXXFPPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRPPLSQXPIXGEXGXP 428
PP + +PP +P P P G GGG PP+ P G P
Sbjct: 717 PPVYAPYPPGITPSPPEYAPEPPPGPPGG------GGGYLPPVVFPPPYASRGPP 765
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/59 (25%), Positives = 18/59 (30%)
Frame = -3
Query: 556 PPPXXXXPGXKKXXAGXGXSXXRGGGXRPPLSQXPIXGEXGXPDXXXXPXGFXGPXXGQ 380
PPP P + G G RG +PP+ Q P G P Q
Sbjct: 11 PPPPPQHPPPPQAGGGGGGEFYRGPPPQPPMRQLSAASSTNIPGDYAAHQGHPPPQQNQ 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,772
Number of Sequences: 37544
Number of extensions: 307009
Number of successful extensions: 1348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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