Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C07
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 38 0.006
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 32 0.55
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 32 0.55
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.72
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.72
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.72
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 31 0.96
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 31 0.96
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 31 0.96
U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription f... 29 5.1
AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinate... 29 5.1
AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of s... 29 5.1
AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of s... 29 5.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 8.9
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 38.3 bits (85), Expect = 0.006
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Frame = -3
Query: 643 GGXPXXFFXGXTPR--GXXPPPFXXFPPXFSPPPXXXXPG-XKKXXAGXGXSXXRG--GG 479
G P F +P+ G PPP P F+PPP PG + G G GG
Sbjct: 349 GAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGG 408
Query: 478 XRPPLSQXP-IXGEXGXPDXXXXPXGFXGPXXGQNG 374
PP P G G P P GF P G G
Sbjct: 409 YGPPPPGGPGAPGSYGPPQ--GGPGGFGPPPPGGPG 442
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.9 bits (69), Expect = 0.55
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Frame = -3
Query: 634 PXXFFXGXTPRGXXPPPFXXF-----PPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRP 470
P FF PRG PPP F PP F PPP G + GG P
Sbjct: 292 PFGFFP-PPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYP 350
Query: 469 PLSQXP 452
P P
Sbjct: 351 PFFPPP 356
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Frame = -3
Query: 634 PXXFFXGXTPRGXXPPPFXX------FPPXFSPPP 548
P F PRG PPP +PP F PPP
Sbjct: 323 PPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPP 357
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.9 bits (69), Expect = 0.55
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Frame = -3
Query: 634 PXXFFXGXTPRGXXPPPFXXF-----PPXFSPPPXXXXPGXKKXXAGXGXSXXRGGGXRP 470
P FF PRG PPP F PP F PPP G + GG P
Sbjct: 292 PFGFFP-PPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYP 350
Query: 469 PLSQXP 452
P P
Sbjct: 351 PFFPPP 356
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Frame = -3
Query: 634 PXXFFXGXTPRGXXPPPFXX------FPPXFSPPP 548
P F PRG PPP +PP F PPP
Sbjct: 323 PPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPP 357
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/83 (28%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Frame = -3
Query: 646 GGGXPXXFFXGXTPRGXXPPPFXXFPPXF-SPPPXXXXPGXKKXXAGXGXSXXRGGGXRP 470
GG P T PPP PP PPP G G GG P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 469 PLSQXPIXGEXGXPDXXXXPXGF 401
P P G G P P F
Sbjct: 771 PPPPPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/83 (28%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Frame = -3
Query: 646 GGGXPXXFFXGXTPRGXXPPPFXXFPPXF-SPPPXXXXPGXKKXXAGXGXSXXRGGGXRP 470
GG P T PPP PP PPP G G GG P
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Query: 469 PLSQXPIXGEXGXPDXXXXPXGF 401
P P G G P P F
Sbjct: 771 PPPPPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/83 (28%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Frame = -3
Query: 646 GGGXPXXFFXGXTPRGXXPPPFXXFPPXF-SPPPXXXXPGXKKXXAGXGXSXXRGGGXRP 470
GG P T PPP PP PPP G G GG P
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Query: 469 PLSQXPIXGEXGXPDXXXXPXGF 401
P P G G P P F
Sbjct: 354 PPPPPPPGGFKGGPPPPPPPGMF 376
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -3
Query: 640 GXPXXFFXGXTPRGXXPPPFXXFPPXFSPPPXXXXP 533
G P G P G PPPF PP PPP P
Sbjct: 73 GQPMPHHMGMPPPGMGPPPFMP-PPIGMPPPPLGMP 107
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -3
Query: 640 GXPXXFFXGXTPRGXXPPPFXXFPPXFSPPPXXXXP 533
G P G P G PPPF PP PPP P
Sbjct: 96 GQPMPHHMGMPPPGMGPPPFMP-PPIGMPPPPLGMP 130
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -3
Query: 640 GXPXXFFXGXTPRGXXPPPFXXFPPXFSPPPXXXXP 533
G P G P G PPPF PP PPP P
Sbjct: 346 GQPMPHHMGMPPPGMGPPPFMP-PPIGMPPPPLGMP 380
>U89245-1|AAB49459.1| 612|Caenorhabditis elegans transcription
factor UNC-37 protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 395 SPKXXGXGXXVRXTXFPXNXVLGXXGSXPPXPXGGXPXTRXXFFXTRGPXXGGGGKXGG 571
SP+ G G FP G G P P G P F P GG GG
Sbjct: 99 SPRENGNGAPALPPGFPPGAA-GMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGG 156
>AF003141-10|AAK21487.1| 612|Caenorhabditis elegans Uncoordinated
protein 37 protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 395 SPKXXGXGXXVRXTXFPXNXVLGXXGSXPPXPXGGXPXTRXXFFXTRGPXXGGGGKXGG 571
SP+ G G FP G G P P G P F P GG GG
Sbjct: 99 SPRENGNGAPALPPGFPPGAA-GMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGG 156
>AF001272-1|AAB84235.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 395 SPKXXGXGXXVRXTXFPXNXVLGXXGSXPPXPXGGXPXTRXXFFXTRGPXXGGGGKXGG 571
SP+ G G FP G G P P G P F P GG GG
Sbjct: 99 SPRENGNGAPALPPGFPPGAA-GMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGG 156
>AF001271-1|AAB84234.1| 612|Caenorhabditis elegans enhancer of
split groucho protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +2
Query: 395 SPKXXGXGXXVRXTXFPXNXVLGXXGSXPPXPXGGXPXTRXXFFXTRGPXXGGGGKXGG 571
SP+ G G FP G G P P G P F P GG GG
Sbjct: 99 SPRENGNGAPALPPGFPPGAA-GMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGG 156
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 616 GXTPRGXXPPPFXXFPPXFSPPPXXXXPG 530
G TPR PP +PP PPP PG
Sbjct: 282 GMTPRPPPPPSSGMWPPP-PPPPPGRTPG 309
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 616 GXTPRGXXPPPFXXFPPXFSPPPXXXXPG 530
G TPR PP +PP PPP PG
Sbjct: 292 GMTPRPPPPPSSGMWPPP-PPPPPGRTPG 319
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/70 (30%), Positives = 24/70 (34%)
Frame = +3
Query: 393 GPXXPXGXXXXSGXPXSPKXGXWXXGGLXPPPLWXEXPXPAXXFXXPGXXXXGGGEKXGG 572
GP G G P +P G GG+ P P PA PG G G
Sbjct: 194 GPAGQAGRPGNDGQPGAPSFG----GGVGAPGA----PGPAGDAGSPGQPGAPGQPGRPG 245
Query: 573 KXXKGGGXXP 602
K +GG P
Sbjct: 246 KNAQGGSSRP 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,202
Number of Sequences: 27780
Number of extensions: 214869
Number of successful extensions: 666
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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