Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C06
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = -1

Query: 673 PXSPXXXGGXXXPPXGG--GXXPPPPPXXXXXXXPGG 569
           P +P   G    PP  G  G  PPPPP        GG
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
 Frame = -2

Query: 684 KXXXPXPPPXXGXXXXPPXGGG----XXPPPP 601
           K   P PPP       PP G G      PPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 673 PXSPXXXGGXXXPPXGGGXXPPPPP 599
           P      G    PP G    PPPPP
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.150    0.523 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,916
Number of Sequences: 5004
Number of extensions: 18985
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)