Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C03
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   1.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 944 PXXPRGGXPPPPPXXG 897
           P    GG PPPPP  G
Sbjct: 754 PAPIMGGPPPPPPPPG 769



 Score = 21.8 bits (44), Expect(2) = 1.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 920 PPPPPXXGXXXPP 882
           PPPPP      PP
Sbjct: 764 PPPPPGVAGAGPP 776


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 4.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 447 PAPXXXPPPPPP 412
           P+    PPPPPP
Sbjct: 184 PSDYNPPPPPPP 195



 Score = 22.2 bits (45), Expect(2) = 4.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 429 PPPPPPXXTE 400
           PPPPPP   E
Sbjct: 191 PPPPPPPAVE 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.144    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,496
Number of Sequences: 5004
Number of extensions: 11260
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)