Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C03
(968 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.064
09_02_0603 - 11150739-11150746,11150791-11151340 33 0.26
01_05_0490 + 22672241-22674679 27 1.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.4
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.6
07_01_0479 + 3606663-3607448 29 5.6
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 25 6.2
02_05_0664 + 30717551-30719491 25 6.3
12_01_0495 - 3935395-3937110 25 6.3
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 25 9.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 9.7
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 9.7
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800 28 9.7
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 28 9.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.5 bits (78), Expect = 0.064
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 968 PPXXGGXXPXXPRGGXPPPPPXXGXXXPP 882
PP G P P G PPPPP G PP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366
Score = 32.7 bits (71), Expect = 0.45
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 968 PPXXGGXXPXXPRGGXPPPPPXXGXXXPP 882
PP P P G PPPPP G PP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPP 357
Score = 32.7 bits (71), Expect = 0.45
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = -1
Query: 968 PPXXGGXXPXXPRGGXPPPPPXXGXXXPPXRXXXTXXPXXXGXGXPAXGXGXP 810
PP G P P+G PPPPP G + P G P G P
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPPGG----KKGGPPPPPPKGGASRPPAAPGVP 396
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -1
Query: 965 PXXGGXXPXXPRGGXPPPPPXXGXXXPPXRXXXTXXPXXXGXGXP 831
P P P PPPPP G PP P G P
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 968 PPXXGGXXPXXPRGGXPPPPPXXGXXXPP 882
PP G P +G PPPPP PP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 33.5 bits (73), Expect = 0.26
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -1
Query: 968 PPXXGGXXPXXPRGGXPPPPPXXGXXXPPXRXXXTXXPXXXG 843
PP G P+ G PPPPP PP + P G
Sbjct: 46 PPPPGSTFVPLPQSGVPPPPPLGSFFVPPPQSRVPPPPPQLG 87
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.1 bits (57), Expect(2) = 1.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 447 PAPXXXPPPPPP 412
PAP PPPPPP
Sbjct: 601 PAPPRRPPPPPP 612
Score = 25.8 bits (54), Expect(2) = 2.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 447 PAPXXXPPPPPP 412
P+P PPPPPP
Sbjct: 692 PSPPLPPPPPPP 703
Score = 22.6 bits (46), Expect(2) = 2.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 429 PPPPPPXXTE 400
PPPPPP +E
Sbjct: 700 PPPPPPPMSE 709
Score = 22.2 bits (45), Expect(2) = 1.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 429 PPPPPPXXT 403
PPPPPP T
Sbjct: 641 PPPPPPPTT 649
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -3
Query: 891 PPPPPXXRXGPAXXPXGXRAXXGXGXTR 808
PPPPP R PA P G R G G TR
Sbjct: 1217 PPPPPGGRGLPA--PPGGRGVVGHGLTR 1242
Score = 28.7 bits (61), Expect = 7.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 929 GGXPPPPPXXGXXXPP 882
GG PPPPP G PP
Sbjct: 1146 GGVPPPPPVGGLGGPP 1161
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 883 GGXXXPXXGGGGGXPPRGXXGXXPP 957
GG GGGG PP G G PP
Sbjct: 94 GGGAPGPLGGGGARPPGGGGGGGPP 118
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -1
Query: 953 GXXPXXPRGGXPPPPPXXGXXXPPXRXXXTXXPXXXGXGXPAXGXGXP 810
G P P G PPPPP PP P G P G P
Sbjct: 192 GVPPAFP--GGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMP 237
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 25.0 bits (52), Expect(2) = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 447 PAPXXXPPPPPP 412
P P PPPPPP
Sbjct: 201 PLPPPPPPPPPP 212
Score = 22.2 bits (45), Expect(2) = 6.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 429 PPPPPPXXT 403
PPPPPP T
Sbjct: 206 PPPPPPPDT 214
>02_05_0664 + 30717551-30719491
Length = 646
Score = 25.0 bits (52), Expect(2) = 6.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 447 PAPXXXPPPPPP 412
P P PPPPPP
Sbjct: 11 PQPLPLPPPPPP 22
Score = 22.2 bits (45), Expect(2) = 6.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 429 PPPPPPXXT 403
PPPPPP T
Sbjct: 18 PPPPPPTST 26
>12_01_0495 - 3935395-3937110
Length = 571
Score = 25.0 bits (52), Expect(2) = 6.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 447 PAPXXXPPPPPP 412
P P PPPPPP
Sbjct: 5 PPPPLPPPPPPP 16
Score = 22.2 bits (45), Expect(2) = 6.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 429 PPPPPPXXT 403
PPPPPP T
Sbjct: 13 PPPPPPPAT 21
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 24.6 bits (51), Expect(2) = 9.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 447 PAPXXXPPPPPP 412
P P PPPPPP
Sbjct: 56 PNPNPKPPPPPP 67
Score = 21.8 bits (44), Expect(2) = 9.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 429 PPPPPPXXTE 400
PPPPPP E
Sbjct: 63 PPPPPPQEPE 72
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 944 PXXPRGGXPPPPPXXGXXXPP 882
P P+GG PP PP PP
Sbjct: 11 PPPPQGGFPPQPPPMNPYGPP 31
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 447 PAPXXXPPPPPPXXT 403
PAP PPPPPP T
Sbjct: 593 PAPKAAPPPPPPKST 607
>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
Length = 389
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 459 GXXXPAPXXXPPPPPP 412
G PAP PPPPPP
Sbjct: 18 GPPAPAPVPPPPPPPP 33
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 28.3 bits (60), Expect = 9.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 968 PPXXGGXXPXXPRGGXPPPPPXXGXXXPP 882
PP P PR PPPPP PP
Sbjct: 39 PPPARHRAPSPPRPPPPPPPPTQPAPPPP 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.144 0.478
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,773
Number of Sequences: 37544
Number of extensions: 251227
Number of successful extensions: 4325
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3510
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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