Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C02
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.005
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.69
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.69
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.91
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 588 PPXGXXXPXPXP-PXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXPPP 740
PP P P P P PP P GG PPPP PP PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPP----PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.5 bits (73), Expect = 0.042
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 626 PGPPPXKXXXPXPXGGDPPPAXXXXPXGXFPPXKXPPPXXAXXXXXXXXPPP 781
P PPP P P P P P PP PPP A PPP
Sbjct: 732 PPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.5 bits (73), Expect = 0.042
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +2
Query: 620 PXPGPPPXKXXXPXPX-GGDPPPAXXXXPXGXFPPXKXP-PPXXAXXXXXXXXPPP 781
P P P P P P GG PPP G PP P PP + P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 30.3 bits (65), Expect = 0.39
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Frame = +1
Query: 571 RXPXTXPXGGXXPLXXXXPXAAPPKXSXPXXXRGGPPPRXXX-GPXXXVPPX*XPPPPPG 747
+ P P P P PP P GGPPP G PP PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPP----PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Query: 748 XXXXXXXXTPPP 783
P P
Sbjct: 786 SAGGSRYYAPAP 797
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.69
Identities = 22/65 (33%), Positives = 22/65 (33%)
Frame = -2
Query: 781 GGGXXXXXXXXXXXGGGXFXGGEXXXGXPXXGGGGVPPXXXXGXXFXGGRPXGGXGXGXX 602
GGG GG GGE G GG P G GG P GG G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP-GGFGGGLG 252
Query: 601 XPXGG 587
GG
Sbjct: 253 GFGGG 257
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = -3
Query: 789 GXXGGGXXXXXXXXAXXGG-GXLXGGNXPXGXXXXAGGGSPPXGXGXXXFXGGGPGXGXA 613
G GGG GG G G G GGG G F GG G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 612 XG 607
G
Sbjct: 251 LG 252
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.69
Identities = 16/56 (28%), Positives = 16/56 (28%)
Frame = +2
Query: 614 AXPXPGPPPXKXXXPXPXGGDPPPAXXXXPXGXFPPXKXPPPXXAXXXXXXXXPPP 781
A P P P P P G PP PP PP PPP
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Frame = +3
Query: 609 PXPXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXP----PPXXXXXXXXXXHP 776
P PP +P P G PP P P +PP P PP P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVP---KPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 777 PP 782
PP
Sbjct: 1193 PP 1194
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 588 PPXGXXXPXPXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXPP 737
PP P P P G PP P P P G P P PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPP---VPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/94 (23%), Positives = 22/94 (23%)
Frame = +2
Query: 620 PXPGPPPXKXXXPXPXGGDPPPAXXXXPXGXFPPXKXPPPXXAXXXXXXXXPPPXXPXXX 799
P P P P P G P PA P P PP P P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP---VPKPSVAVPPVPAPSGAP 1121
Query: 800 XXXXXSXXXPPXXXXXXXXXXXXXXXXPPPXPXP 901
S PP PP P P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 609 PXPXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXPP 737
P P P G PP P G P PP P P PP
Sbjct: 1170 PVPAPSSGIPP---VPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +3
Query: 609 PXPXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXP 734
P PP +P P G PP P P +PP P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVP---KPSVAAPPVPAP 1155
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.91
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = +2
Query: 608 PXAXPXPGPPPXKXXX---PXPXGGDPPPAXXXXPXGXFPPXKXPPPXXA 748
P P PP P P PPP+ P G PP PPP A
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG--PPSAPPPPLPA 1737
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 609 PXPXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXPPP 740
P PP RP P PPPP P +PP PP
Sbjct: 1686 PVSTPPV-RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +1
Query: 634 APPKXSXPXXXRGGPPPRXXXGPXXXVPPX*XPPPPPGXXXXXXXXTPPP 783
A P + P + PP+ P PP PPPP + PP
Sbjct: 1684 AHPVSTPPVRPQSAAPPQ-MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Frame = +3
Query: 588 PPXGXXXPXPXPPXGRPPXKXXPXXXXG--GTPPPP 689
PP P PP PP P G PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Frame = +3
Query: 588 PPXGXXXPXPX----PPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCS-PPXXXP 734
PP P P PP PP P PP P P S PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +2
Query: 614 AXPXPG--PPPXKXXXPXPXGGDPPPAXXXXPXGXFPPXKXPPPXXAXXXXXXXXPPPXX 787
A P P PP P P P P+ P P K PP + PP
Sbjct: 143 APPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Query: 788 P 790
P
Sbjct: 203 P 203
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 637 PPKXSXPXXXRGGPPPRXXXGPXXXVPPX*XPPPPPGXXXXXXXXTPP 780
PP P G PP +PP PPPPP PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPP---PPPPPRSNAAGSIPLPP 355
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +1
Query: 676 PPPRXXXGPXXXVPPX*X--PPPPPGXXXXXXXXTPPP 783
PPPR +PP PPPPP PPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +3
Query: 561 SKGAXXXNXPPXGXXXPXPXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXPPP 740
S A PP G P P PP P G PPP +PP PPP
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPST---------GRQPPPLSSSRAVSNPP--APPP 393
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 615 PXPPXGRPPXKXXPXXXXGGTPPPPXXGXPXXCSPPXXXPPP 740
P P RPP + P PP P SPP P P
Sbjct: 234 PSIPSSRPPERV-PSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 673 GPPPRXXXGPXXXVPPX*XPPPPPGXXXXXXXXTP 777
G PP P P PPPPPG TP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 591 PXGXXXPXPXPPXGRPPXKXXPXXXXGGTPPPP 689
P G P P PP PP + P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP-------PPPP 30
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 712 VPPX*XPPPPPGXXXXXXXXTPPP 783
+PP PPPPP PPP
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPP 27
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 700 PXXXVPPX*XPPPPPGXXXXXXXXTPPP 783
P PP PPPPPG PPP
Sbjct: 5 PPGNPPP---PPPPPGFEPPSQPPPPPP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,004
Number of Sequences: 5004
Number of extensions: 25667
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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