Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C01
         (1004 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    28   9.1  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    28   9.1  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    28   9.1  

>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 640 GGGXXGKXRGGFXKXXKKXGF*XGGFF 720
           GGG  G  RGGF     + G   GGF+
Sbjct: 618 GGGFSGPRRGGFNSGMNRQGGGGGGFY 644


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 640 GGGXXGKXRGGFXKXXKKXGF*XGGFF 720
           GGG  G  RGGF     + G   GGF+
Sbjct: 602 GGGFSGPRRGGFNSGMNRQGGGGGGFY 628


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 640 GGGXXGKXRGGFXKXXKKXGF*XGGFF 720
           GGG  G  RGGF     + G   GGF+
Sbjct: 599 GGGFSGPRRGGFNSGMNRQGGGGGGFY 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,373,376
Number of Sequences: 27780
Number of extensions: 66853
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)