Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B24
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    33   0.041
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    30   0.38 
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    28   2.0  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    27   4.7  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   6.2  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   8.2  

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
 Frame = +2

Query: 305 SKLYLVEYQHLLERQDIKVRHVLALYLR----SYELTNTVPFNVDALTNGQPIEQHPTEK 472
           SKLY++    L  +Q ++  H L + +R     YE+  T PF    + NG+     P E 
Sbjct: 139 SKLYMLSESPLSTKQILQTLHALNMLIRIRLSLYEIIPT-PFQHFTIANGRCTFTVPNEF 197

Query: 473 DVEGPTENNSTSDSEAEMQYL---FNRSKITASGNPRVNTFRILAELKLANDLVAIIRFT 643
            V   T +     +    Q++   F       S  P    +R+  EL L  ++ A     
Sbjct: 198 SVSLTTNSQDPKSTGISFQWIVVDFQFHLPDFSSTPA--KYRVFIELHLNEEIAAAFVLQ 255

Query: 644 KDVVP 658
           K ++P
Sbjct: 256 KPILP 260


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 604 ETSKRSSGHNPFHERRRALTASTPLRGRSHEXLKNLRNQIYXTE 735
           E+ +R   H+P HER R+  AS  +  RSH  L++  NQI+  E
Sbjct: 81  ESKQRQLPHSPEHERSRSPIASV-VSYRSHMTLED-ENQIFNAE 122


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 598 RTETSKRSSGHNPFHERRRALTASTPLRGRSHEXLKNLRNQ 720
           R E  +RS GHN + E    LTAS  L  R+    K+L  Q
Sbjct: 624 RCEKKRRSVGHNSYKEHLVLLTASRILFFRNLVWAKDLMAQ 664


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 290 IRISGSKLYLVEYQHLLERQDIKVRHVLALYLRSYELTNTVPFNVDALTNGQPIEQHP 463
           +++     Y+V+    ++ ++IK    +AL   SY+L   +P  VD L +   +E+ P
Sbjct: 83  VKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIP 140


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 662 VKARRLS*NGLWPLDRLLVSVLQVFERYLPSDCQML*SYSD*ISIASQLHC 510
           V  +R+S    W   R L   +  FER+ P D  +L  ++D +S+ S + C
Sbjct: 181 VHNKRISNIKHWQDVRHLAFKIPNFERWKPGDVAVLYPWNDDMSVNSFIEC 231


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 638 NGLWPLDRLLVSVLQVFERYLPS 570
           NGLWP   +L  VL +F  ++P+
Sbjct: 127 NGLWPFKIVLWFVLGIFSFFIPT 149


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = +2

Query: 224 KSVREKKY**D*KTEQRDVL*XIRISGSKLYLVEYQHLLERQDIKVRHVLALYLRSYELT 403
           K  RE+K     KT +R +L     +  ++  ++Y H++E  D+   +  ALY+ + +  
Sbjct: 309 KLSRERKSISVDKTSKRAILAPTNWAYREIIDIDY-HIIENFDLPAPNKYALYVTNIKSG 367

Query: 404 NTVPFNVDAL 433
           N+V  + +AL
Sbjct: 368 NSVGEDTNAL 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,210
Number of Sequences: 5004
Number of extensions: 62290
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)