Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B24
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 405 FVSSYERKYNAKTCLTFISCLSRRCWYSTK*SLLPDILI 289
           ++++Y+  +  +T +TF   + R+  + T   +LP +LI
Sbjct: 209 YLNTYKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLI 247


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 586 SNTCRTETSKRSSG 627
           SNTC    S+RSSG
Sbjct: 18  SNTCSNSQSQRSSG 31


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 586 SNTCRTETSKRSSG 627
           SNTC    S+RSSG
Sbjct: 18  SNTCSNSQSQRSSG 31


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 234 GKRNISKIKKRNSETCFXL*GYQG 305
           GKR+ + I   NS T   + GYQG
Sbjct: 264 GKRDAAGIYGSNSSTVGTIFGYQG 287


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 632 LWPLDRLLVSVLQVFERYLPSDCQML*SYSD*ISIASQLH 513
           L+PLDR + S+      +   D   L    D + +   LH
Sbjct: 166 LYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQVVKNLH 205


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 632 LWPLDRLLVSVLQVFERYLPSDCQML*SYSD*ISIASQLH 513
           L+PLDR + S+      +   D   L    D + +   LH
Sbjct: 166 LYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQVVKNLH 205


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 562 WQSEGKYLSNTCRTETSK 615
           W+ +GK LSNT R +  +
Sbjct: 427 WELDGKRLSNTERLQVGQ 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,617
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)