Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B22
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 288 ILWFPCIIFITVS 250
           +LW P +IF+ +S
Sbjct: 118 LLWTPAVIFVVLS 130


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = +1

Query: 235 YLKWKGYSDED---NTWEPEDNLDCPD 306
           +L W  Y +     N WE   N+ CP+
Sbjct: 590 FLSWFRYGNGALMINQWENVTNIQCPN 616


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
 Frame = +1

Query: 235 YLKWKGYSDED---NTWEPEDNLDCPD 306
           +L W  Y +     N WE   N+ CP+
Sbjct: 590 FLSWFRYGNGALMINQWENVTNIQCPN 616


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,402
Number of Sequences: 336
Number of extensions: 2832
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)