Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    52   8e-08
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    41   2e-04
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    39   0.001
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    36   0.010
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.5  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   3.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   4.6  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   6.1  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   8.1  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +1

Query: 202 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 294
           DR  KNG+ EYY+KW GY   DNTWEPE NL
Sbjct: 30  DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 196 VLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLI 312
           +LD R+K      +YYLKW+GY D  DNTW + ED   C +LI
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 214 KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQ 315
           K G  EY LKW+GY D  DNTW  E D   C  LI+
Sbjct: 94  KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIE 129


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 196 VLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 294
           ++D ++ +NG ++ Y ++W  YS   +TWEP +NL
Sbjct: 13  IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 EYYLKWKGYSDEDNTWEPEDNL 294
           E+ +KW  +S    TWEP +N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 143 TRKKKTNQKPKRNFLLKKFWTGALRMVFW 229
           T+ K   +KP +NF+ +  WT  L  +F+
Sbjct: 39  TKHKSLARKPSQNFITRTIWTFLLLGIFF 67


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 214 KNGVLEYYLKWKGYSDEDNTWEPED 288
           + G  EY++KW+    ++ TWE  D
Sbjct: 316 EEGKTEYFVKWRQLPYDNCTWEDAD 340


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -2

Query: 633 HVSLXHKMNNYLWAPHISLFCWYKIC-----FICSLPFHEEHEFTTTIRSANY 490
           H SL   + N  W+  +  + + K       F  S   H +H F TTI S+NY
Sbjct: 420 HYSLSFSIINIFWSTALKSYIFEKFTNTILGFWLSTQ-HHKHPFLTTIGSSNY 471


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 289 YPLVPMYYLHHCILSISSNI 230
           YPL P++ L +C+L I S++
Sbjct: 513 YPLAPIFSLVNCVLYIRSSV 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,030
Number of Sequences: 5004
Number of extensions: 43168
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)