Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_B21
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 101 6e-22
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 101 8e-22
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 62 8e-10
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 31 1.3
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 29 5.2
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 29 5.2
06_03_1068 - 27341103-27341444,27341689-27341929,27342030-273423... 29 6.9
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553... 28 9.1
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 101 bits (243), Expect = 6e-22
Identities = 60/142 (42%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Frame = +1
Query: 361 PYKLHKWDXVPATSATLXSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQXX 540
P+ H D P+ T + L + ++++RR+E A+ +LYK K+IRGFCHLY GQ
Sbjct: 40 PFTSHIVDP-PSRDVTTTPAELLTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLYDGQEA 98
Query: 541 XXXXXXXXXXXXXSVITAYRCHGWTYL-MGVSVLXVLSELTGRRTGCSRGKEGPC--ICT 711
S+ITAYR H TYL G ++ +EL GR+ GCSRGK G
Sbjct: 99 VAVGMEAAITRSDSIITAYRDH-CTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKK 157
Query: 712 DATSMVATGIVGAQVPLGXXLA 777
DA GIVGAQVPLG LA
Sbjct: 158 DANFYGGHGIVGAQVPLGCGLA 179
Score = 77.8 bits (183), Expect = 1e-14
Identities = 38/71 (53%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 684 GQGRSMHLYGR--NFYGGNGNCWCAGPVGXRIGFAPXYRADGGXTFALYGDGXANXGQFF 857
G+G SMH Y + NFYGG+G P+G + FA YR + TFALYGDG AN GQ F
Sbjct: 147 GKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFAQKYRKEETATFALYGDGAANQGQLF 206
Query: 858 EAYNMSKLWGL 890
EA N+S LW L
Sbjct: 207 EALNISALWKL 217
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 101 bits (242), Expect = 8e-22
Identities = 61/141 (43%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Frame = +1
Query: 361 PYKLHKWDXVPATSATLXSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQXX 540
PYK H D P AT E A + ++ +RR E A+ +LYK K+IRGFCHLY GQ
Sbjct: 48 PYKSHIVDPPPREVATTARELAT-FFRDMSAMRRAEIAADSLYKAKLIRGFCHLYDGQEA 106
Query: 541 XXXXXXXXXXXXXSVITAYRCHGWTYLMGVSVLXVLSELTGRRTGCSRGKEGP--CICTD 714
++ITAYR H G + + +EL GRR GCSRGK G D
Sbjct: 107 VAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHLYKKD 166
Query: 715 ATSMVATGIVGAQVPLGXXLA 777
A GIVGAQVPLG LA
Sbjct: 167 ANFYGGHGIVGAQVPLGCGLA 187
Score = 79.0 bits (186), Expect = 5e-15
Identities = 38/71 (53%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 684 GQGRSMHLYGR--NFYGGNGNCWCAGPVGXRIGFAPXYRADGGXTFALYGDGXANXGQFF 857
G+G SMHLY + NFYGG+G P+G + FA YR + TF LYGDG AN GQ F
Sbjct: 155 GKGGSMHLYKKDANFYGGHGIVGAQVPLGCGLAFAQRYRKEAAVTFDLYGDGAANQGQLF 214
Query: 858 EAYNMSKLWGL 890
EA NM+ LW L
Sbjct: 215 EALNMAALWKL 225
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 61.7 bits (143), Expect = 8e-10
Identities = 33/101 (32%), Positives = 48/101 (47%)
Frame = +1
Query: 394 ATSATLXSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQXXXXXXXXXXXXX 573
A + + E+AL+LYE + + R E +Y + GF HLY+GQ
Sbjct: 68 AAHSAVTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQ 127
Query: 574 XXSVITAYRCHGWTYLMGVSVLXVLSELTGRRTGCSRGKEG 696
V++ YR H GV V++EL G+ TGC RG+ G
Sbjct: 128 ADCVVSTYRDHVHALSKGVPARSVMAELFGKATGCCRGQGG 168
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +3
Query: 684 GQGRSMHLYGR--NFYGGNGNCWCAGPVGXRIGFAPXYR--------ADG-GXTFALYGD 830
GQG SMH++ N GG PV FA YR DG T A +GD
Sbjct: 165 GQGGSMHMFSEPHNLLGGFAFIGEGIPVATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGD 224
Query: 831 GXANXGQFFEAYNMSKLWGLAL 896
G N GQFFE NM++LW L +
Sbjct: 225 GTCNNGQFFECLNMAQLWKLPI 246
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 688 KEGPCICTDATSMVATGIVGAQVPLGXXLASPPXTA 795
K P + A +T ++ A +PLG ++SPP +A
Sbjct: 585 KPSPAVAASAQQQASTKLMAAPLPLGSWVSSPPASA 620
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 710 VQMHGPSLPREQPVLRPVSSESTXSTLTPMR 618
V +H PS +PV+R ++ + TLTP R
Sbjct: 481 VALHRPSTAERRPVVREIAPKHADVTLTPAR 511
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 616 YLMGVSVLXVLSELTGRRTGCSRGKE 693
Y GV +L ++S RTGCS+G+E
Sbjct: 763 YAFGVVILEIISGRRPIRTGCSKGQE 788
>06_03_1068 -
27341103-27341444,27341689-27341929,27342030-27342343,
27342672-27343805
Length = 676
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 742 VGAQVPLGXXLASPPXTAPTXXSRSLFMETXPP 840
VGA++P G L PP T T ++++ E P
Sbjct: 242 VGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 274
>11_06_0356 -
22654329-22654571,22654695-22654898,22655065-22655319,
22655435-22655626,22655738-22656046,22656149-22656355,
22656450-22656527,22657493-22657747,22657850-22658000,
22658269-22658500,22658631-22658886,22658960-22659091
Length = 837
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 341 RRHSKSSPTNSINGIXSLQXQPHSXLKMLLSCMNN*RY 454
RR +++PT + I SLQ Q + L+M L C+ R+
Sbjct: 264 RRFQQTTPTYTSEEIGSLQRQVKTCLEMALQCVEADRH 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,120,996
Number of Sequences: 37544
Number of extensions: 342745
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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