Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_B19
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 33 0.22
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 30 2.7
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 29 6.2
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 29 6.2
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 28 8.2
07_01_1106 - 10187609-10190041,10190292-10191932 28 8.2
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 28 8.2
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 28 8.2
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 33.5 bits (73), Expect = 0.22
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +2
Query: 281 GQSADHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQDPHLLSKPLNALGVLTSK 460
G+ H G P T+ G + GLN S ++ + G + LL +L L +
Sbjct: 356 GRVFSHGGYFPQATNYGGPFPSFGLNGTS-SIPMEKGRRRGRGNALLCSCNGSLDFLNEQ 414
Query: 461 GQKVPDAIGLEPKPGPVGGSSDEKPALGL 547
+ P A PK P G DEKP+ G+
Sbjct: 415 SRG-PRAT--RPKKQPEDGGKDEKPSAGV 440
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 543 PRAGFSSELPPTGPGFGSNP 484
P G S +PP GPG+G NP
Sbjct: 312 PPWGHPSNVPPGGPGYGGNP 331
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/95 (24%), Positives = 42/95 (44%)
Frame = -1
Query: 453 VNTPNAFKGFERRCGSCSDEIPLLSPKASERSFNPRLSSEPLALVRPGISPA*SADWPVL 274
+ + NAF G +P+++P +S R+ N LS + + PG P +
Sbjct: 393 IQSLNAFSSVAHISGMGLKVVPMIAPFSSLRAIN--LSGNFIVHISPGSLPKGLHSLDLS 450
Query: 273 RPKVLRAPLTGLSPMIPKGLFSISSGLLFNTGNGL 169
R K+ A + GL + + ++S + G+GL
Sbjct: 451 RNKI--ANIEGLRELTKLRVLNLSYNRISRIGHGL 483
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 215 KPLGIIGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNLGLNDL 364
KP+ + D + +LST GQSA IP TSA+G+ L NDL
Sbjct: 563 KPISSL-DMFLQVSLSTSAKTNGQSATLNVRIPSWTSANGAKATLNDNDL 611
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 210 SISSGLLFNTGNGLLRTLERSPGVN 136
S SG+L TG+G + L +SPG+N
Sbjct: 132 STGSGVLSTTGSGSMSNLGQSPGLN 156
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 242 PVS-GALSTLGLRTGQSADHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQ 406
PVS G LS L L L P GSL+NL L+D +G+ LQ
Sbjct: 423 PVSFGDLSNLRLLDLSGCRSLRLFPSSFVNLGSLENLNLSDCIRLMGIPQNFEDLQ 478
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 41 RFWSQLVP-WTSWRSHSRYCLVIIGV--AFVYSAPLTPG 148
R W ++P W SW ++R +V+ GV AF+Y L+ G
Sbjct: 259 RLWMTMLPCWESWAVYARQEVVLPGVALAFLYFTVLSFG 297
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 28.3 bits (60), Expect = 8.2
Identities = 28/100 (28%), Positives = 41/100 (41%)
Frame = +2
Query: 227 IIGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQ 406
II DKP + +T S+D + G + + LND L +G ++
Sbjct: 640 IISDKPTNEVSATNSSPDDTSSDEDTVESGGIVEVSNSQPMPLND-----SLENGCATQG 694
Query: 407 DPHLLSKPLNALGVLTSKGQKVPDAIGLEPKPGPVGGSSD 526
P + P N+ GV + K GLEP PV G+ D
Sbjct: 695 LP--ANAPTNSTGVSSVKLWTNAGLFGLEPSKPPVFGAHD 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,342,397
Number of Sequences: 37544
Number of extensions: 435553
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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