Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B19
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    29   3.2  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    29   3.2  
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    29   5.5  
U80029-7|ABC71799.1|  201|Caenorhabditis elegans Hypothetical pr...    28   9.7  
M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.     28   9.7  

>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 226 NHRRQTCQWSSKYLRS*DWPVCRSCRADTWPN*C 327
           N R    +   K +R  DWPVC   RA+ W   C
Sbjct: 140 NKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 173


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 226 NHRRQTCQWSSKYLRS*DWPVCRSCRADTWPN*C 327
           N R    +   K +R  DWPVC   RA+ W   C
Sbjct: 197 NKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 230


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +2

Query: 221 LGIIGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNL-GLNDLSEALGLNSGIS 397
           +G  GD   S + S    R+ QS+  AGL+   T+ +G++DN+ G +         +  +
Sbjct: 354 IGRAGDSASSRSASLTSFRSMQSSGGAGLLVS-TNTTGAMDNVHGSSGYGNGSSSTTSSA 412

Query: 398 SLQDP----HLLSKPLNALGVLTSKGQKVPD--AIGLEPKPGP 508
             + P     L S   + +G + S G       AI + P P P
Sbjct: 413 RRRPPIPSQMLSSTSTSGVGTMPSHGSVGASITAIAVNPTPSP 455


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +2

Query: 221 LGIIGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNL-GLNDLSEALGLNSGIS 397
           +G  GD   S + S    R+ QS+  AGL+   T+ +G++DN+ G +         +  +
Sbjct: 354 IGRAGDSASSRSASLTSFRSMQSSGGAGLLVS-TNTTGAMDNVHGSSGYGNGSSSTTSSA 412

Query: 398 SLQDP----HLLSKPLNALGVLTSKGQKVPD--AIGLEPKPGP 508
             + P     L S   + +G + S G       AI + P P P
Sbjct: 413 RRRPPIPSQMLSSTSTSGVGTMPSHGSVGASITAIAVNPTPSP 455


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 40  KILESISPLDIMALTQQILFGDYRRSLCLLCSIDSGAPFQCP 165
           K+ ESI+  D  A+   +L G    S+C+LC+    +P  CP
Sbjct: 16  KLYESITKPDDEAILVPVL-GACLHSICILCATGLESPNSCP 56


>U80029-7|ABC71799.1|  201|Caenorhabditis elegans Hypothetical
           protein T20D4.10 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/83 (25%), Positives = 32/83 (38%)
 Frame = +2

Query: 230 IGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQD 409
           +  K V+      G   G+S      I GL+      DNL +ND  E            D
Sbjct: 17  VAHKAVATGAEDAGCTDGESLRAFSCIMGLSDFIKKTDNLDMNDKKELKVFK------DD 70

Query: 410 PHLLSKPLNALGVLTSKGQKVPD 478
            H +    N +  L + G+K+P+
Sbjct: 71  CHNVISCFNKIKCLGTDGEKIPE 93


>M25477-1|AAA27991.1|  329|Caenorhabditis elegans collagen protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
 Frame = +2

Query: 218 PLGIIGDKPVSGALSTLGL--RTGQSADHAGLIPGLTSASGSLDNLGLNDLSEALGLNSG 391
           P+G +G K   G   + G   + G+S D      G+    G +   G + +  A G    
Sbjct: 193 PMGAMGPKGPPGPKGSPGEPPQDGKSGDD-----GMAGQPGPIGRPGRDGMKGAPGARGR 247

Query: 392 ISSLQDPHLLSKPLNALGVLTSKGQKVPDAIGLEPKPGPVGGS 520
           +  +  P         +G    KG   PD    +  PGP G S
Sbjct: 248 LIPVPGPQGAPGKPGPIGPPGPKGNPGPDGQSYQGPPGPPGDS 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,450
Number of Sequences: 27780
Number of extensions: 372013
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)