Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B18
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    29   0.078
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   1.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   9.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   9.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   9.0  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 449 EIIHKVVYLQNELYARPSTQWLASRSGHSIRRRPCSGYK 565
           E+IH++VY QNE Y +PS + L   +         S YK
Sbjct: 337 ELIHRLVYFQNE-YEQPSEEDLKRITNQPSEGEDISDYK 374


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 301 ITLECLRCERQISVSKIISIFVQWSYNTIIFC 396
           +TL  +  E  I  + +I+ +  WSYN + +C
Sbjct: 86  LTLGYVTREVSIDGNPLIAPYPNWSYNDVKYC 117


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +2

Query: 389 YFAHSNSNFQKKEYRNNRLFEIIHKVVYLQNELYARPSTQWLA 517
           Y  ++N+N+++  Y  N + +I   V         RP   W++
Sbjct: 91  YSNYNNNNYKQLCYNINHIEQIPVPVPVYYGNFPPRPMGSWIS 133


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 398 HSNSNFQKKEYRNN 439
           H+N+N+    Y NN
Sbjct: 324 HNNNNYNNNNYNNN 337


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 137 ILYFTEHSFCYEVTKKTTPTLNYSK 211
           ILYF+E ++  + TK+ +   +YS+
Sbjct: 526 ILYFSEFAYLGKPTKEDSEWPSYSR 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,579
Number of Sequences: 438
Number of extensions: 4803
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)