Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_B17
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-16|AAN63464.1| 275|Caenorhabditis elegans Hypothetical p... 51 1e-06
U32305-15|AAK18858.4| 567|Caenorhabditis elegans Hypothetical p... 51 1e-06
Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z81516-6|CAB04206.1| 524|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z75535-5|CAA99829.1| 524|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z92970-3|CAB07482.1| 383|Caenorhabditis elegans Hypothetical pr... 33 0.28
U88176-2|AAO91740.3| 550|Caenorhabditis elegans Hypothetical pr... 32 0.48
AC006835-1|AAF40015.2| 903|Caenorhabditis elegans Hypothetical ... 31 1.1
Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF067219-11|AAC17032.1| 227|Caenorhabditis elegans Hypothetical... 30 1.9
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical... 29 3.4
AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenase... 28 7.8
AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenase... 28 7.8
AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenase... 28 7.8
>U32305-16|AAN63464.1| 275|Caenorhabditis elegans Hypothetical
protein B0336.11b protein.
Length = 275
Score = 51.2 bits (117), Expect = 1e-06
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Frame = +2
Query: 281 HNSYSLKRYLRAF-HTVDNAFQAILKTNKWRVEYGVADLHNNKELIEKYSDKAKVLRHRD 457
H + L R+L + + VD A+ +L+ KWR + V D + L ++ L +D
Sbjct: 54 HEDWWLDRFLGSVNYDVDIAYAIMLECLKWRRNFEV-DRISLLSLKPLLDNQLMYLHGKD 112
Query: 458 AIGRPIIYIPAKNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIVFDLNNFTLSC 637
R +++I Y + D ++L F + + C L + D+ L
Sbjct: 113 LQNRHMLWIMMNKYKNGDDGFEKLFTFWIERHYMEYKGC-----QPLTVFIDMTGTGLKN 167
Query: 638 MDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGCWTVIKGWLD 772
M + +K +I +YP + LI P + W VI WL+
Sbjct: 168 MSFDAMKFIIHSSKYYYPNSIESILIFENPAILNASWKVIGSWLE 212
>U32305-15|AAK18858.4| 567|Caenorhabditis elegans Hypothetical
protein B0336.11a protein.
Length = 567
Score = 51.2 bits (117), Expect = 1e-06
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Frame = +2
Query: 281 HNSYSLKRYLRAF-HTVDNAFQAILKTNKWRVEYGVADLHNNKELIEKYSDKAKVLRHRD 457
H + L R+L + + VD A+ +L+ KWR + V D + L ++ L +D
Sbjct: 54 HEDWWLDRFLGSVNYDVDIAYAIMLECLKWRRNFEV-DRISLLSLKPLLDNQLMYLHGKD 112
Query: 458 AIGRPIIYIPAKNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIVFDLNNFTLSC 637
R +++I Y + D ++L F + + C L + D+ L
Sbjct: 113 LQNRHMLWIMMNKYKNGDDGFEKLFTFWIERHYMEYKGC-----QPLTVFIDMTGTGLKN 167
Query: 638 MDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGCWTVIKGWLD 772
M + +K +I +YP + LI P + W VI WL+
Sbjct: 168 MSFDAMKFIIHSSKYYYPNSIESILIFENPAILNASWKVIGSWLE 212
>Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical
protein T23G5.2a protein.
Length = 719
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 587 VDNLCIVFDLNNFTLSCM---DYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGCWTVI 757
+ + +V DL+ ++ + Q L +I ++ +YPE +G L++ AP F WT+I
Sbjct: 389 ISSWSLVVDLDGLSMRHLWRPGVQCLLKIIEIVEANYPETMGQVLVVRAPRVFPVLWTLI 448
Query: 758 KGWLD 772
++D
Sbjct: 449 SPFID 453
>Z81516-6|CAB04206.1| 524|Caenorhabditis elegans Hypothetical
protein F26H9.1 protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 206 PVNEEDLKQLKERMNLI---ASADPAQYHNSYSLKRYLRAFHTVDNAFQAIL 352
P+ E++K K+ +NL S+DPA N Y L ++ F T NA L
Sbjct: 280 PILREEMKLRKKTLNLFLNNGSSDPAHGVNKYFLSSLMKVFKTAHNALPTAL 331
>Z75535-5|CAA99829.1| 524|Caenorhabditis elegans Hypothetical
protein F26H9.1 protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 206 PVNEEDLKQLKERMNLI---ASADPAQYHNSYSLKRYLRAFHTVDNAFQAIL 352
P+ E++K K+ +NL S+DPA N Y L ++ F T NA L
Sbjct: 280 PILREEMKLRKKTLNLFLNNGSSDPAHGVNKYFLSSLMKVFKTAHNALPTAL 331
>Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical
protein T13H5.2 protein.
Length = 408
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 602 IVFDLNNFTLSCMDYQILKNLIWLLSR---HYPERLGVCLIINAPTFFSGCWTVI 757
++FDL+ ++ +D LK + +LS+ +P+ + I+N PTF W++I
Sbjct: 172 VIFDLDGLSMVQIDLAALKVVTTMLSQLQEMFPDVIRKIFIVNTPTFIQVLWSMI 226
>Z92970-3|CAB07482.1| 383|Caenorhabditis elegans Hypothetical
protein H06O01.3 protein.
Length = 383
Score = 33.1 bits (72), Expect = 0.28
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Frame = +2
Query: 407 ELIEKYSDKAKVLRHRDAIGRPIIYIPAKNYNSSD--RNIDELT--KFIVYCLEVASNKC 574
E +EKY + D GRPI+ N + R++ L KF + +E C
Sbjct: 75 ECLEKYCGYGLL---GDTEGRPILMSLLGNVDVEGLLRSVASLDYIKFSLAAIEKGMKLC 131
Query: 575 FEEVVDN------LCIVFDLNNFT---LSCMDY-QILKNLIWLLSRHYPERLGVCLIINA 724
E+ ++ + +VFDL N T SC + L+ L HYP L LII A
Sbjct: 132 EEKAKESGRPFEQMTLVFDLENITSAHFSCKQFASSFTTLVSLFQDHYPLFLRKILIIRA 191
Query: 725 P 727
P
Sbjct: 192 P 192
>U88176-2|AAO91740.3| 550|Caenorhabditis elegans Hypothetical
protein F18F11.4 protein.
Length = 550
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 674 LSRHYPERLGVCLIINAPTFFSGCWTVI 757
++ HYP LGVCL P FF WTVI
Sbjct: 183 ITHHYPHTLGVCL---QPIFFFTDWTVI 207
>AC006835-1|AAF40015.2| 903|Caenorhabditis elegans Hypothetical
protein ZK993.2 protein.
Length = 903
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/86 (22%), Positives = 40/86 (46%)
Frame = +2
Query: 365 WRVEYGVADLHNNKELIEKYSDKAKVLRHRDAIGRPIIYIPAKNYNSSDRNIDELTKFIV 544
W E + L N+K LI+ + +++L+ R + +P K+Y DE+ K ++
Sbjct: 415 WAYEITMKSLQNDKRLIKLFESISELLQARLMASKYFPDVPGKSYE------DEIFKRLL 468
Query: 545 YCLEVASNKCFEEVVDNLCIVFDLNN 622
Y + + + D+ I+ D ++
Sbjct: 469 YFICINKENLISDTEDHQPILIDCSH 494
>Z79753-3|CAB02088.1| 377|Caenorhabditis elegans Hypothetical
protein F20G2.3 protein.
Length = 377
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 584 VVDNLCIVFDLNNFTLSCMDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGCWTVIK 760
++D I FD TL L + ++ HY E + +++N P F S WT+ K
Sbjct: 148 IMDLTGIKFDKRTITLLTGG---LSAISAFMAEHYVELVHSFVLVNVPAFISAIWTIAK 203
>AF067219-11|AAC17032.1| 227|Caenorhabditis elegans Hypothetical
protein R12E2.11 protein.
Length = 227
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -3
Query: 480 YIIGLPMASLCLSTLALSEYFSISSLLLCKSATPYSTLHL 361
Y++G+P A+L L+TL +S+ ++ L+ K A Y T L
Sbjct: 92 YVVGVPYAALPLATL-VSDILNVPMLMKRKEAKAYGTKQL 130
>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
protein Y57A10A.15 protein.
Length = 1072
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 671 LLSRHY-PERLGVCLIINAPTFFS--GCWTVIKGWLDXTQLVRDLXELRDG 814
LL R Y +R+G+C + N FFS C TV++ +D + D ++ DG
Sbjct: 1005 LLVRAYISQRVGICQLPNTVAFFSQVDCDTVLRKEVDTESINPDGSKIADG 1055
>AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform b protein.
Length = 247
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 614 LNNFTLSCMDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGC 745
LN + + Y ++ L++L+ RH+ E+L + + F +GC
Sbjct: 9 LNLTVVESVFYLVVAFLLFLIGRHFIEKLQINNLSKRAVFITGC 52
>AF003130-6|AAO38639.1| 343|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform c protein.
Length = 343
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 614 LNNFTLSCMDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGC 745
LN + + Y ++ L++L+ RH+ E+L + + F +GC
Sbjct: 9 LNLTVVESVFYLVVAFLLFLIGRHFIEKLQINNLSKRAVFITGC 52
>AF003130-5|AAB54122.2| 368|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform a protein.
Length = 368
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 614 LNNFTLSCMDYQILKNLIWLLSRHYPERLGVCLIINAPTFFSGC 745
LN + + Y ++ L++L+ RH+ E+L + + F +GC
Sbjct: 34 LNLTVVESVFYLVVAFLLFLIGRHFIEKLQINNLSKRAVFITGC 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,693
Number of Sequences: 27780
Number of extensions: 330309
Number of successful extensions: 806
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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