Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B17
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.2  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 844 ANIRYEYLQRSISELT-KVPYQLCXIQPSFDYSPTSGEKCGGI 719
           A IRY+ +  S++ ++ K+    C +QP  D+S  + + C GI
Sbjct: 83  AVIRYDGVPSSLNVISEKIGNGGCLLQPYPDWSWANYKDCSGI 125


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 159 LVNYSCFSLCAC**YHLSQ 103
           L NYSCF  CA    H+ Q
Sbjct: 72  LTNYSCFITCALEKSHIIQ 90


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 605 VFDLNNFTLSCMDYQILK 658
           +FD+N   L+CM  ++LK
Sbjct: 111 IFDINLLGLTCMIQEVLK 128


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 575 FEEVVDNLCIVFDLNNFTLSCMDYQILK 658
           FE ++  L  +FD    ++ C++ Q+LK
Sbjct: 276 FEVLLVRLACMFDAQTNSMICLNGQVLK 303


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 473 IIYIPAKNYNSSDRNIDE 526
           IIY+ AK +   D NID+
Sbjct: 262 IIYLSAKGHRPIDDNIDD 279


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 292 ITVMILSWVCTGYKIHTFFQLL*VFFI 212
           +TV+I++W   G + H   QL+   F+
Sbjct: 313 VTVIIINWNFRGPRTHRMPQLIRKIFL 339


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 497 YNSSDRNIDELT 532
           YN S RN+D+LT
Sbjct: 470 YNGSFRNLDQLT 481


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 428 DKAKVLRHRDAIGRPIIYIPAKNYNSSDRNIDELTKFIVYCLEVASNKCFEEVVDNLCIV 607
           +K+K   H +     +  +  ++ NS + N  +   FIV  L     +C  +   N+C+ 
Sbjct: 60  EKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLK 119

Query: 608 F-DLNNFTLSCMDYQILKN 661
           F +      S  D +IL+N
Sbjct: 120 FEEQKRRKKSLDDVKILRN 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,185
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)