Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B16
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   8.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  ESLRF*SHKLSIYAFVCENRYQISLSIH 112
           E L+F   ++   +F+CEN  +  L++H
Sbjct: 105 EYLKFSYPRMRAPSFICENETRQGLTLH 132


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 321 FDGQPINENDTPTSLEM 371
           FDG  I EN+ P  LE+
Sbjct: 178 FDGDFITENNLPLGLEV 194


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 577 LLCVTKLLPNTFTDTNDVSLK 515
           ++C +KLL + + DT + +LK
Sbjct: 135 IICFSKLLSDMYEDTFEDTLK 155


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 177 LPSFHQPF*D*LWLLETINTKL*IDKLIWYLFSQ 76
           L SF QPF + LW+L  ++    +  L+ YL  +
Sbjct: 557 LVSFLQPFSNTLWILVMVSVH--VVALVLYLLDR 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,354
Number of Sequences: 438
Number of extensions: 4083
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)