Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B14
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020...    27   1.5  
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224...    29   6.6  
11_06_0401 - 23139276-23140304                                         28   8.7  
07_01_0344 - 2490700-2493249                                           28   8.7  
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847...    28   8.7  

>03_02_0829 -
           11599665-11600364,11600853-11601076,11601786-11602000,
           11602300-11602377,11602593-11603907
          Length = 843

 Score = 26.6 bits (56), Expect(2) = 1.5
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +3

Query: 555 DIPDVNPNLVEMLEEDGITLENDSDSENLEKFTYGFANKICNEFCSIGNEFPQIFELKAP 734
           D+ D   + +   E+D    E+D D+ + E     F N+  N+         Q  E  A 
Sbjct: 232 DLKDAEKSPINGREDDFAESEDDFDNPSSEPLVRVFQNR--NDMPVENTVMNQTPEHVAS 289

Query: 735 ENVAVDERNSMRMKHEN-DKFS 797
           E +A +   S   K EN D FS
Sbjct: 290 EKLASENSVSFSRKQENSDSFS 311



 Score = 22.6 bits (46), Expect(2) = 1.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 447 GSYTCDSGDFNLTFEKETAGEHFENLDMITNLLAPRDIPDV 569
           G +      F+   EKE  G  FEN D I  L     IP++
Sbjct: 169 GLFNPVENQFSFHDEKEP-GHDFENADDIRRLREKEGIPEL 208


>03_05_0527 +
           25220375-25221425,25221513-25222182,25222347-25222440,
           25222688-25222870
          Length = 665

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 624 SDSENLEKFTYGFANKICNEFCSIGNEFPQIFELKAPENVAVDERNSMRMKHENDKFSSD 803
           +D+E  EKF  G  +++ N+   I  ++    +L        D+RN M MK +  +F S+
Sbjct: 217 TDAEKQEKFLAGLDDELTNQL--ISGDYADFEKLVDKAIRQEDQRNKMDMKRKAAQFRSN 274


>11_06_0401 - 23139276-23140304
          Length = 342

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 510 HFENLDMITNLLAPRDIPDVNPNLVEMLEEDGITLE 617
           HF   D +   +APR++P + P L+    + G+  E
Sbjct: 258 HFVYTDTLPETMAPREVPAMAPQLIAAARKYGLDWE 293


>07_01_0344 - 2490700-2493249
          Length = 849

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
 Frame = +3

Query: 342 DTEIDVDGENFLFVSSPYFLRLRLPGRIV-----DDDRAKGSYTCDSGDFNLT----FEK 494
           D+  DVDG  ++  SSP    L LPG +      D     G    ++  FN +    F  
Sbjct: 37  DSTTDVDGRRWIGDSSPKNFTLSLPGTVATAPDSDGKETYGDLYKNARIFNASSSYKFIV 96

Query: 495 ETAGEHFENL---DMITNLLAPRDIPDVNPNLVEMLEEDGITLE 617
             AG +F  L    + TN      + DV+ N ++++ +  +  E
Sbjct: 97  AAAGSYFLRLHFSQLPTNFSTKESLFDVSANGLKLVSKFNVPAE 140


>02_04_0228 -
           21083917-21084067,21084489-21084577,21084662-21084731,
           21084747-21084823,21084954-21085337,21085420-21085760,
           21085869-21085950,21086033-21086391,21087084-21087204,
           21087427-21087512,21088896-21088944,21089262-21089275,
           21089467-21089545
          Length = 633

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +3

Query: 345 TEIDVDGENFLFVSSPYFLRLRLPGRIVDDDRAKGSYTCDSGDFNLTFEKETAGEHF--- 515
           T +  D E   ++  P  L  R P  +++  +   S    SG  NLTFE+    EH    
Sbjct: 38  TWVSHDHERTGWIGGPMPLFKRKPFSLLEPPKDLDSKEKISGKSNLTFEEALVSEHHAVS 97

Query: 516 ENLDMITNLLAP--RDIPDVNPNLVEMLEEDGITLENDSDSENLEKF 650
           +   + T L+AP  R I      L E++E+   +L+ ++  E LE +
Sbjct: 98  KAQKLPTELMAPVLRMIQYSTLGLYELVEKIYASLQ-EAVFEGLELY 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,686,859
Number of Sequences: 37544
Number of extensions: 415737
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)