Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B13
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   1.1  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   4.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   7.7  

>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 483 LNIIFSAFCQCIFFLFCSVTIDELQPVLPVQKNRNCFIF 367
           L ++F+ FC CI+FL   +   E+     +    NC IF
Sbjct: 39  LVLLFAFFCPCIYFLHTFLADCEIAKSTCITSVFNCLIF 77


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 483 IIFVFTYLYTDWLLHSQYRYNIFIYL*TNKAVYKKLLYSYGCIDTAAASNISITFNTNKH 662
           ++  F Y+    LL     + IF+Y       ++ ++YS    + A+A   S+ FN +K 
Sbjct: 271 LLISFVYIKPARLLIYVPLFFIFVYSFLGHKEWRFIIYSIPWFNAASAIGASLCFNASKF 330

Query: 663 QSRKV--VLYVIPFLGV 707
             +K+  +L ++ F G+
Sbjct: 331 -GKKIFEILRLMFFSGI 346


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 307  LCKAIINRNGAEDRLIKLQTNFYFTARNVTLKKQVP 200
            L   I+N   +E+RL  L  NFY  +  V +K   P
Sbjct: 1405 LASIIVNVPSSENRLSTLMANFYAFSLTVMMKPTHP 1440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,502
Number of Sequences: 5004
Number of extensions: 56285
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)