Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B13
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    30   2.4  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    30   2.4  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    30   2.4  
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    30   2.4  
Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    28   7.2  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    28   9.5  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    28   9.5  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 475 NI*LSSFLPIYIRIGYYIVNIDIIFLYIYKRTKLFI-KNYCILMV 606
           N+ L   LPI+  IG        IF+Y+++RT LF+ +N+   M+
Sbjct: 349 NVFLPQELPIFALIGLVCGLAGSIFVYLHRRTVLFLRRNWLAKMI 393


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 475 NI*LSSFLPIYIRIGYYIVNIDIIFLYIYKRTKLFI-KNYCILMV 606
           N+ L   LPI+  IG        IF+Y+++RT LF+ +N+   M+
Sbjct: 278 NVFLPQELPIFALIGLVCGLAGSIFVYLHRRTVLFLRRNWLAKMI 322


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 475 NI*LSSFLPIYIRIGYYIVNIDIIFLYIYKRTKLFI-KNYCILMV 606
           N+ L   LPI+  IG        IF+Y+++RT LF+ +N+   M+
Sbjct: 278 NVFLPQELPIFALIGLVCGLAGSIFVYLHRRTVLFLRRNWLAKMI 322


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 475 NI*LSSFLPIYIRIGYYIVNIDIIFLYIYKRTKLFI-KNYCILMV 606
           N+ L   LPI+  IG        IF+Y+++RT LF+ +N+   M+
Sbjct: 349 NVFLPQELPIFALIGLVCGLAGSIFVYLHRRTVLFLRRNWLAKMI 393


>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 486 IFVFTYLYTDWLLHSQYRYNIFIYL*TNKAVYKKLL--YSYGCI 611
           + VFT L+T + ++S   Y    Y+   + +YK ++  +++GCI
Sbjct: 7   LIVFTGLFTAFFVNSFLIYLTLFYITCIRGIYKYMIVWFAFGCI 50


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -2

Query: 708 LHQETELHITQPYAT----GVCLC*KLLRYYLQRQCR 610
           LH  +    T+PY T    GVC+C  +L +YL  Q R
Sbjct: 490 LHSTSLFTATEPYFTRAISGVCVCLGVLNHYLYPQFR 526


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +1

Query: 436 KKKENTLTKCRENNI*LSSFLPIYIRIGYYIVNIDIIFLYIYKRTKLFIKNYCILMVAST 615
           KK  ++    +EN   LS+ L  Y+ +G++I    +  +Y+ K    F K+  ++++++ 
Sbjct: 243 KKSTSSARFIKENKTDLSTKLIGYMTVGFFITGTPLGIIYLTK--AFFDKSEAVVILSTD 300

Query: 616 LPL 624
           L L
Sbjct: 301 LAL 303


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 493 FLPIYIRIGYYIVN-IDIIFLYIYKRTKLFIKNYCILMVASTLPLQVISQ*LLTQTNTSR 669
           +L   I    YI   I+I+ LYIY + KLF   Y    V  T+ L ++   L+       
Sbjct: 89  YLGTTIAASMYITGAIEILLLYIYPQAKLFDDIYHNFRVLGTVLLLILG--LIVMAGVKF 146

Query: 670 VRLC 681
           V  C
Sbjct: 147 VNRC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,259
Number of Sequences: 27780
Number of extensions: 317605
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)