Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B12
         (911 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   5.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -1

Query: 671 NPGRFSPPAKYRSSFLHLTK--QGKW---CHLG 588
           NP   S P K RS+FL   K   GKW   C LG
Sbjct: 683 NPSTGSKPGKPRSAFLTDLKLMGGKWSCDCDLG 715


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 655 ENLPGFDDLKKADQI 699
           + LPGFD L + DQI
Sbjct: 374 KRLPGFDKLLREDQI 388


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 424 LSCYVYLCLWFWFLE 380
           ++C +YL   FWF++
Sbjct: 221 INCLIYLIGGFWFMQ 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,754
Number of Sequences: 336
Number of extensions: 3469
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)