Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B09
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    51   2e-07
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    26   8.1  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
 Frame = +1

Query: 364 NYTKYDQLGILFDKLESTYPDLAKLYSIGNSVEGRKLLVLQITQDVQNEHPERPAFKYV- 540
           +Y   + +      + S Y DL++L  +G + EGR +L L++     +++ E+   K V 
Sbjct: 182 SYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKKVI 241

Query: 541 ---ANMHGDESIGRQIVIYLAQYLLLNYGKNERVTKLVNSTDIHLMPSLNPDGFE 696
                 H  E IG   V Y A  LL  Y  +  V KL++  +   +P LN DG+E
Sbjct: 242 IIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYE 296


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 427 LAKLYSIGNSVEGRKLLVLQITQDVQN 507
           LAKLYS  N +EG  +++   T+ ++N
Sbjct: 895 LAKLYSWTNRIEGENIILSNETEVIEN 921


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 292 FSLTIAKAQVSAVTNEDESFLKTSNYTKYDQLGILFDKLESTYPDLAK 435
           F++ IAK QV  +    +S ++T    K   L  +FD + +++  L K
Sbjct: 409 FNVNIAKLQVETLHKLIDSAMQTEKVKKDPSLSQVFDGISNSFNTLHK 456


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 334 NEDESFLKTSNYTKYDQLGILFDKLESTYPDLAKLYSIGNSVEGRKLLVLQITQD 498
           N D  ++   N T Y Q   + DKL S    L K+Y + + V  +  +V +IT +
Sbjct: 67  NNDPEYVMCYN-TVYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNE 120


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +1

Query: 538 VANMHGDESIGRQIVIYLAQYLLLNYGKNER 630
           V+N++G + IG+  +IY ++ + ++ GK E+
Sbjct: 239 VSNVNGPQFIGKWNIIYKSKTIKVDDGKREK 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,610,335
Number of Sequences: 5004
Number of extensions: 76370
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)