Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B09
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    27   0.30 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.92 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 731 PLNDSQFPSSLASNPSGFRDGIKCISVL---FTSFVTLSFLP*FNNK 600
           PLN +     L     G+  GI+C++V+   F SF+  + L  F NK
Sbjct: 364 PLNTTNGRKGLLKGGGGYLLGIQCLTVVCLAFWSFIVSTILLWFINK 410


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 373 KYDQLGILFDKLESTYPDLAKLYSIGN 453
           K ++ GILF  + + Y +  ++Y +GN
Sbjct: 769 KCEERGILFMPIPNRYREAKQIYKVGN 795


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 197 KIVQMQYSDL*FRKPRFIRQRCIAG 271
           K+V  ++S+L   KP+  R++ +AG
Sbjct: 257 KMVNQKFSELIQSKPQHARRKVLAG 281


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 574 QIVIYLAQYLLLNYGKNERVTKLVNSTDIHLMPSLN 681
           QIV+ +    L+ YG    V  L N T  ++   L+
Sbjct: 17  QIVLIIVMGALMTYGPEANVNLLKNRTGRYMFTYLH 52


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +1

Query: 226 LISKAPXHTTKMYRWIRMLI 285
           ++   P HT+  ++W +M I
Sbjct: 115 ILDLVPNHTSDQHKWFQMSI 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,765
Number of Sequences: 438
Number of extensions: 5466
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)