Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_B08
(902 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.5
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.5
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.5
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 23 2.5
AM292382-1|CAL23194.2| 670|Tribolium castaneum gustatory recept... 23 4.3
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 22 5.7
AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosin... 22 7.6
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 10.0
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 10.0
AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH trans... 21 10.0
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 457 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 353
LP V + + LL T FN FM+ V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 457 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 353
LP V + + LL T FN FM+ V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 457 LPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 353
LP V + + LL T FN FM+ V L + L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 23.4 bits (48), Expect = 2.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 707 PIETTMPPINEGSTLAVSCTVS 642
P + INEG ++V CTVS
Sbjct: 607 PFDFGEDSINEGDGVSVQCTVS 628
>AM292382-1|CAL23194.2| 670|Tribolium castaneum gustatory receptor
candidate 61 protein.
Length = 670
Score = 22.6 bits (46), Expect = 4.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 415 FNASTFMLLFIVGLMMNSLSFASVLI 338
FN +L+F+V L NS F ++I
Sbjct: 75 FNTFAKLLIFVVSLSGNSAVFIMLII 100
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 569 LQPNH*IKHRDKIW 610
L PN+ I+H+ K+W
Sbjct: 407 LPPNYEIRHKFKLW 420
>AY618898-1|AAU87291.1| 803|Tribolium castaneum receptor tyrosine
kinase Torso-likeprotein protein.
Length = 803
Score = 21.8 bits (44), Expect = 7.6
Identities = 15/72 (20%), Positives = 28/72 (38%)
Frame = +3
Query: 294 ALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLL 473
A IV + ++ KT +K +PT + + ++ + P +L+G +
Sbjct: 461 AFGIVRRAFLDLKEDNKTQVAVKMLKESPTSEEIRQFTQEINIMKSVRQHPYIVSLIGCV 520
Query: 474 AENGRLGKLEAV 509
E G L V
Sbjct: 521 TEGRAEGPLLVV 532
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 10.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 460 RLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 353
++P + + L+ T FN FM+ V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 10.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 460 RLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSF 353
++P + + L+ T FN FM+ V L + L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298
>AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH
transcription factor protein.
Length = 193
Score = 21.4 bits (43), Expect = 10.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +3
Query: 228 VQVFGLEGRYASALFSAASKTKALDI 305
+Q L RY L+ S ALD+
Sbjct: 134 IQTLKLAARYIDFLYHVLSNENALDV 159
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,757
Number of Sequences: 336
Number of extensions: 4212
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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