Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B08
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    76   8e-15
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   6.4  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   8.4  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   8.4  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 75.8 bits (178), Expect = 8e-15
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
 Frame = +3

Query: 129 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 305
           +IF   I ++A   +L +RSL+T+ ASA    PPVQ++GL+G YAS+L++AA K   LD 
Sbjct: 3   HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59

Query: 306 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 485
           VEK L +    ++   + +++I +P + R  K   +  +       P   N   +L +N 
Sbjct: 60  VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119

Query: 486 RLGKLEAVINAFKIMMAAHRG 548
           RL  L  +   F  +M A RG
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRG 140



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = +1

Query: 547 GEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDM 726
           GE+  ++ +A PLD      LE+ + K   G   + ++ KV PS+IGG++V IGD  +D+
Sbjct: 140 GEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNKVTPSIIGGLIVEIGDNILDV 199

Query: 727 SV 732
           SV
Sbjct: 200 SV 201


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 418  CFNASTFMLLFIVGLMMNSLSF-ASVLID 335
            C     F+LL   GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 523 LKALMTASSFPKRPFSASNPSRLPVVG 443
           L   +T  + P++PFS S+P+  P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 484 PFSASNPSRLPVVGERLILLATCFNASTFML 392
           PFS    S+LPV G   ILL   F  +T+++
Sbjct: 3   PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 75  RNIWSIKPKV*KILLTCANIFLNKIMSALKGNLLVRSLSTSVASAQM 215
           R +WSI  K  K +   +N+  ++   AL  NLL    S    SA++
Sbjct: 739 RGLWSIDSKESKNMHISSNVVASEAPDALAANLLAMYESNPKKSAKV 785


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 237 FGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIK 389
           +G E       +  A   K+ D ++KEL    +S+K+ A+    I++  I+
Sbjct: 602 YGEEDPDVIVCYIGADDGKSPDQIQKELADLAESVKSSAEASAKIVSEIIQ 652


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 466 PSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASV 344
           P + P      ++   CF A  F+++FI  +    LSF +V
Sbjct: 188 PLKRPNTSISNVIWLICFGAPLFLVIFICYIFFTVLSFFNV 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,012
Number of Sequences: 5004
Number of extensions: 68097
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)