Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_B08
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 71 1e-12
02_05_0759 + 31545473-31546204 49 6e-06
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 29 5.1
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 29 6.7
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 29 6.7
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778... 29 6.7
07_03_1216 + 24940426-24940714,24940800-24940877,24941954-249421... 28 8.8
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 70.9 bits (166), Expect = 1e-12
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Frame = +3
Query: 180 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 353
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++ K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
Query: 354 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 533
+FI + ++ + +V A+ + + S T N L +LA+NGRL ++ + F +
Sbjct: 83 LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
Query: 534 AAHRG 548
AH+G
Sbjct: 143 MAHKG 147
Score = 50.0 bits (114), Expect = 3e-06
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +1
Query: 547 GEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDM 726
GEV V T PL + + + L+ L+ L N+T+ + K+D S++GG+V+ G K DM
Sbjct: 147 GEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQKVFDM 206
Query: 727 SV 732
S+
Sbjct: 207 SI 208
>02_05_0759 + 31545473-31546204
Length = 243
Score = 48.8 bits (111), Expect = 6e-06
Identities = 25/90 (27%), Positives = 44/90 (48%)
Frame = +3
Query: 255 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 434
YA+AL AS+ L+ +L + ++ +A + EF NPT+ R K + +A
Sbjct: 64 YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122
Query: 435 SLSPTTGNLLGLLAENGRLGKLEAVINAFK 524
L N L ++ +NGR G + ++ F+
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE 152
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = -1
Query: 698 TTMPPINEGSTLAVSCTVSLPFRNFLSAASKFCLCA*SNGLAVTTSQATSPPVGSHHNLK 519
T PPI++ S VS T S P N +S+ SNGLA TT A++ S+ + K
Sbjct: 623 TDKPPISQSSGQIVSFT-SNPVFNVISSKPTTL----SNGLADTTKSASAAVFPSNGSTK 677
Query: 518 SI 513
S+
Sbjct: 678 SV 679
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 28.7 bits (61), Expect = 6.7
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +3
Query: 243 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 416
LE Y S A K KAL+ + E C+ ++ AK + F+ R V AL
Sbjct: 56 LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115
Query: 417 HVANKISLSPTTGNLLGLLAENGRLGK 497
V K + L G+L NG K
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDK 137
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 538 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 443
AA+ +L+ A++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>03_02_0358 +
7784067-7784128,7784239-7785040,7785513-7785617,
7785835-7786194
Length = 442
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +1
Query: 544 GGEVACEVV-----TAKPLDQAQR-QNLEAALKKFLKGNETVQLTAKVDPSLIGGM 693
GG VA V T P+D A R + +E+ L+ L+G T DPS G +
Sbjct: 156 GGRVAALVFVRDEETGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211
>07_03_1216 +
24940426-24940714,24940800-24940877,24941954-24942129,
24942298-24942492
Length = 245
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 556 LLHPRWAAIIILKALMTASSFPKRPFSASNPSRLPVVGER 437
LLH AA ++ + ++ S PK PF ++P R+P R
Sbjct: 5 LLHAPAAAAAVVPSPLSLRSPPKTPFLPTSPIRVPTPRRR 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,702,340
Number of Sequences: 37544
Number of extensions: 432509
Number of successful extensions: 1073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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