Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B08
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...   128   5e-30
U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...   126   2e-29
AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate rec...    29   6.0  
AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical...    28   7.9  

>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score =  128 bits (309), Expect = 5e-30
 Identities = 62/141 (43%), Positives = 95/141 (67%), Gaps = 2/141 (1%)
 Frame = +3

Query: 132 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 305
           ++L  +   +   L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K   LD 
Sbjct: 12  LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71

Query: 306 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 485
           +  +L   +   K + K +EF+++PT+K + K  A++ ++ K+ L+  TGN LGLLAENG
Sbjct: 72  ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131

Query: 486 RLGKLEAVINAFKIMMAAHRG 548
           RL KLE+V+++F+ +M AHRG
Sbjct: 132 RLNKLESVVSSFESIMRAHRG 152



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 27/63 (42%), Positives = 43/63 (68%)
 Frame = +1

Query: 547 GEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDM 726
           GE+  +V +A+ L  + ++ L  AL K  K  + + +T  V PS++GG+VV+IGDKYVD+
Sbjct: 152 GELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTIGDKYVDL 211

Query: 727 SVA 735
           S+A
Sbjct: 212 SIA 214


>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score =  126 bits (304), Expect = 2e-29
 Identities = 61/128 (47%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
 Frame = +3

Query: 171 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIK 344
           L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K   LD +  +L   +   K
Sbjct: 4   LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63

Query: 345 TDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFK 524
            + K +EF+++PT+K + K  A++ ++ K+ L+  TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64  DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123

Query: 525 IMMAAHRG 548
            +M AHRG
Sbjct: 124 SIMRAHRG 131



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 27/63 (42%), Positives = 43/63 (68%)
 Frame = +1

Query: 547 GEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMVVSIGDKYVDM 726
           GE+  +V +A+ L  + ++ L  AL K  K  + + +T  V PS++GG+VV+IGDKYVD+
Sbjct: 131 GELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTIGDKYVDL 190

Query: 727 SVA 735
           S+A
Sbjct: 191 SIA 193


>AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform a protein.
          Length = 844

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 305 RGKRTLPVSTVYQN*CKAQGIHHQPDNKKKHEGRCVETCRQ*DQSFSYNW 454
           R  RTL V+++++     + I   PD + KHEG CV+   +  +   +N+
Sbjct: 406 RESRTLKVTSIHEKPYVIEKI--MPDGRIKHEGFCVDLLDKLAEMLHFNY 453


>AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical
           protein F25E5.2 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 264 ALFSAASKTKALDIVEKELCQFQQSIK 344
           +LF+AA+KT + D+VE  LC  + S +
Sbjct: 134 SLFTAANKTISQDLVENGLCSKEDSFR 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,086
Number of Sequences: 27780
Number of extensions: 384657
Number of successful extensions: 1106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)