Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B04
         (997 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   2.7  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
 Frame = +2

Query: 275 CSPRRRRAPPNPHSPSRAAPPGLR--RRG-----NVHRLPGDTGASDDNNTWNG 415
           C PR RR PP    P R  P   +  +RG        R  G    S+DN   NG
Sbjct: 506 CRPRARRNPPATTRPVRHRPTRRKSTKRGKKDDKGYDRRSGKEERSNDNRYTNG 559



 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 287 RRRAPPNPHSPSRAAPPGLRRRGNVHR 367
           RR  PP   + + AAP G RRR  + R
Sbjct: 474 RRTIPPTRVAAAAAAPEGRRRRRAIAR 500


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,441
Number of Sequences: 2352
Number of extensions: 14700
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 109352334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)