Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_B04
(997 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 9.0
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 28 9.0
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 9.0
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 236 SRASRSTSGSDLGCSPRRRRAPPNPHSPS--RAAPPGLRRR 352
+R RS S S +PRRRR+P SP+ R PP RRR
Sbjct: 373 ARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRR 413
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 236 SRASRSTSGSDLGCSPRRRRAPPNPHSPSRAAPPGLRRR 352
S A+R+ SGS PRRRR+P S S++ PP RRR
Sbjct: 292 SVAARAKSGS-----PRRRRSP----SASKSPPPARRRR 321
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 251 STSGSDLGCSPRRRRAPPNPHSPSRAAPPGLRRRGNVHRLPGDTGA--SDDNNTWNGN 418
S+SGS S RR PP P P + G R G +R + + S++NN +NGN
Sbjct: 522 SSSGSG---SNRRSGPPPPPPPPRSSGANGNRNGGGGNRRNNNKNSSNSNNNNNFNGN 576
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 30.7 bits (66), Expect = 1.7
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Frame = +2
Query: 239 RASRSTSGSDLGCSPRRRR------APPNPHSPSRAAPPGLRRRGNVHRLPGDTGASDDN 400
R SR+ SD SP RRR +PP P R P R R + R D SD++
Sbjct: 134 RPSRNRHDSDKDNSPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPPRTRRDRHDSDNS 193
Query: 401 NTWN------GNSTQQM*PTTPSKGAQD 466
N NS + P++P++ +D
Sbjct: 194 PPRNRSRRDSDNSPPRRRPSSPARRRKD 221
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical protein
C10C6.6 protein.
Length = 1178
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 257 SGSDLGCSPRRRRAPPNPHSPSRAAPPGLRRRGNVHRLPGDTGASDDN 400
SG+ L P APP ++ R APPG R R + + A DN
Sbjct: 869 SGAQLPQRPGAPGAPPAANAARRDAPPGARARAPLPPMANAAQARLDN 916
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 SPRRRRAPPNPHSPSRAAPPG-LRRRGNVHRLPGDTGA 388
SP+ + P P +P R APPG + H PG GA
Sbjct: 376 SPQAGQQQPTPGTPHRFAPPGPSGTTSSPHFAPGAPGA 413
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 SPRRRRAPPNPHSPSRAAPPG-LRRRGNVHRLPGDTGA 388
SP+ + P P +P R APPG + H PG GA
Sbjct: 374 SPQAGQQQPTPGTPHRFAPPGPSGTTSSPHFAPGAPGA 411
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein
ZK675.1 protein.
Length = 1405
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 287 RRRAPPNPHSPSRAAPPGLRRRGNVHRLPGDTGASDDNNTWNGNSTQQM*PTTPSKG 457
RR P + PP L + N R GD DD + ++Q PTT + G
Sbjct: 1333 RREISPTGGKTTLTLPPPLPKNANSSRSGGDDSDEDDEPSGLVMYSRQAPPTTRTSG 1389
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 284 RRRRAPPNPHSPSRAAPPGLRRRGNVHRLPGD-TGASDDNNTWNGNSTQQM*PTTPSK 454
R R+ PP P SP RA PP HR P + DD NT S+ + P +
Sbjct: 15 RFRKQPPPPPSPRRAPPP------PPHRKPASLSPPPDDENTIRPPSSSESSENIPEE 66
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +2
Query: 260 GSDLGCSPRRRRAPPNPHSPSRAAPPGLRRRGNVHRLPGDTGASDDNNTWNGNS 421
G CSP PP P P A GL PG G + N G++
Sbjct: 128 GGGCQCSPSSNTCPPGPRGPPGQA--GLDGLPGAPGQPGSNGGAGSNGASEGSA 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,993
Number of Sequences: 27780
Number of extensions: 328715
Number of successful extensions: 1107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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