Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B04
         (997 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    27   0.35 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.9  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 281 PRRRRAPPNPHSPSRAAPPGLRRR 352
           P R   P  PHSP   AP G  RR
Sbjct: 441 PERWTTPTTPHSPLLVAPFGAGRR 464


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 724 SNHIKY*IYEVQIFNSNFKVITANVTE 644
           SN I+  IY     + NF+++ ANV +
Sbjct: 380 SNRIQKVIYGFDFNDVNFRILIANVND 406


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 548 SKLIIPVPSTYDSLRLC 598
           +KL+ PV +T D LR+C
Sbjct: 41  NKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 548 SKLIIPVPSTYDSLRLC 598
           +KL+ PV +T D LR+C
Sbjct: 41  NKLVRPVVNTSDVLRVC 57


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 763 RCQTSTLGAIKKFSNHIKY 707
           R  T+T G  +   NHIKY
Sbjct: 141 RYVTTTSGMFEALCNHIKY 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,074
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)