Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_B03
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/53 (35%), Positives = 19/53 (35%)
 Frame = -2

Query: 876 GGGDXXXGXXGGXPLPXGGXGGXXSGXXXGGXXGGPXRXFXGGNPGFFXXXGG 718
           GGG    G   G P P  G  G   G    G   G    F GG  GF    GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 20/51 (39%), Positives = 22/51 (43%)
 Frame = -2

Query: 888 GXXPGGGDXXXGXXGGXPLPXGGXGGXXSGXXXGGXXGGPXRXFXGGNPGF 736
           G  PGG +   G  GG P   GG  G   G   GG  GGP      G PG+
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGG-GPGGFGGGPG---GHGGPGW 273


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 718 PPPXXKKPXVPPXKXPPG 771
           PPP  + P  PP   PPG
Sbjct: 14  PPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.151    0.535 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,245
Number of Sequences: 5004
Number of extensions: 18950
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)