Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A24
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.96 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.1  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 405 EEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSPLYP 515
           EE ++S K    + Y+ +L +    L +FD   P YP
Sbjct: 257 EEYLYSHKLLLNRYYLERLSNDLPHLEEFDWQKPFYP 293


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 405 EEDIHSQKQSQRQSYVLKLFDRSVDLSQFDEDSPLYP 515
           EE ++S K    + Y+ +L +    L +FD   P YP
Sbjct: 257 EEYLYSHKLLLNRYYLERLSNDLPYLEEFDWQKPFYP 293


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 685 TILILNIHHHQAGXQLLS 738
           TILILN HH  A    +S
Sbjct: 312 TILILNYHHRNADTHEMS 329


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 725 SSCYLHCKPRWVGSEGSXVTTIRTSRS 805
           ++C LHCKP    S+ S     R   S
Sbjct: 345 NNCPLHCKPELGQSQSSPKFVARREES 371


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +3

Query: 195 RIFTPIKNKGKSLTQFPQISNKVKEVTTARGRLQGALM--EILEPALD---SDDSTELTP 359
           ++ TPIK++     +  QIS K     T +G     +   EI +   D    D  TEL+ 
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELST 310

Query: 360 GKRRQSDQDETYVSEEED 413
           G        ET   EE D
Sbjct: 311 G-MNDDIPPETEEEEEND 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,573
Number of Sequences: 438
Number of extensions: 5498
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)