Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A22
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   6.6  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   6.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   6.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   6.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   6.6  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   8.7  

>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -1

Query: 517 KCEKSWPSR-SVNTVNTSSPFW--ATLKFPPLSQAIRASMSWAARS 389
           +C+K  PS  +       S FW   T + P LSQ    S  WAARS
Sbjct: 109 ECQKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARS 154


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 477 TVLTERLGQDFSHFVPTVLPHII 545
           T+LT+R   +FS F+PT+L  I+
Sbjct: 139 TILTKRAKIEFSTFLPTILLPIV 161


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 477 TVLTERLGQDFSHFVPTVLPHII 545
           T+LT+R   +FS F+PT+L  I+
Sbjct: 139 TILTKRAKIEFSTFLPTILLPIV 161


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 477 TVLTERLGQDFSHFVPTVLPHII 545
           T+LT+R   +FS F+PT+L  I+
Sbjct: 139 TILTKRAKIEFSTFLPTILLPIV 161


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 477 TVLTERLGQDFSHFVPTVLPHII 545
           T+LT+R   +FS F+PT+L  I+
Sbjct: 139 TILTKRAKIEFSTFLPTILLPIV 161


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 172 FSIIYINIHCWLANYGCNVLICGRK 246
           FS I + +  W+ANY  N  + G K
Sbjct: 112 FSSILVCVPAWIANYVTNAEVIGEK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,879
Number of Sequences: 5004
Number of extensions: 43179
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)