Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A22
         (931 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0069 + 22506885-22508354                                         29   4.0  
02_05_0868 + 32342967-32343915,32344389-32344447                       29   4.0  
01_01_0093 + 727977-729854,729877-729930                               29   4.0  
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90...    29   7.0  

>04_04_0069 + 22506885-22508354
          Length = 489

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 832 RTAXAXGSAXHXPQXLGXGGAQSCKXPPAPWXVQAGVCMQA 710
           R A   GSA   P   G G A + +  PA W + AG+   A
Sbjct: 127 RRAAVAGSATRRPWLAGDGEAATAEIVPASWRLVAGLSWAA 167


>02_05_0868 + 32342967-32343915,32344389-32344447
          Length = 335

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 629 APLDSPPAPRRTRGPPVSRTPSCPLALSNNMWQDG 525
           +P  +PP  R    PPV+R PS P A+    + +G
Sbjct: 120 SPAPAPPRRRMPSPPPVARRPSTPPAIDPGNYFNG 154


>01_01_0093 + 727977-729854,729877-729930
          Length = 643

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 626 PLDSPPAPRRTRGPPVSRTPSCP 558
           P+D  PAP   + PP S+ P CP
Sbjct: 141 PMDFLPAPPPDQSPPCSKGPRCP 163


>03_01_0113 +
           905535-905840,906601-906812,906929-907196,907314-907595
          Length = 355

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = -3

Query: 614 PPAPRRTRGPPVSRTPSCPLALSNNMWQDGRHEV*EVLAES-FR*HCQYFKPVLGH---- 450
           PP P R  G P       P+A      +DGRH      AES  R     +K V  H    
Sbjct: 40  PPPPPRICGSPGGP----PVAAPRVRLRDGRHLA---YAESGVRKEDARYKVVFSHGFTG 92

Query: 449 LKVSSIKPSDKSIDELGGQIIGY 381
            ++ S++PS +  +ELG  ++G+
Sbjct: 93  SRLDSVRPSPEVAEELGVYMVGF 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,184
Number of Sequences: 37544
Number of extensions: 317964
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)