Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A22
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    30   2.1  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 617 SPPAPRRTRGPPVSRTPS 564
           SPPAPRR R P  SR+P+
Sbjct: 384 SPPAPRRRRSPSKSRSPA 401



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 617 SPPAPRRTRGPPVSRTPS 564
           SPPAPRR R P  S++P+
Sbjct: 433 SPPAPRRRRSPSQSKSPA 450


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -3

Query: 614 PPAPRRTRGPPVSRTPSCP 558
           PP PR  R PPVSR P CP
Sbjct: 58  PPRPRPPR-PPVSREPECP 75


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 626  PLDSPPAPRRTRGPPVSRTPSCPLALSNNMWQDG 525
            P  +PP PR     P+ R P    AL+N  WQ+G
Sbjct: 1326 PPQTPPKPRT----PIQRPPVIQPALTNTTWQEG 1355


>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 538 CGKTVGTKCEKSWPSRSVNTVNTSSPFWAT 449
           CG   G  C  +W  R      T S +W T
Sbjct: 514 CGAIFGAYCSSTWSERHDRKERTRSKYWGT 543


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 538 CGKTVGTKCEKSWPSRSVNTVNTSSPFWAT 449
           CG   G  C  +W  R      T S +W T
Sbjct: 571 CGAIFGAYCSSTWSERHDRKERTRSKYWGT 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,488
Number of Sequences: 27780
Number of extensions: 265770
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)