Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A19
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.91 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 752 PPPPXXRXPKPRPXXXXXGXPXPPPXPXXGXXVGPXP 862
           PPPP    P P P       P PPP P  G    P P
Sbjct: 734 PPPPAVIVPTPAPAP----IPVPPPAPIMGGPPPPPP 766



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
 Frame = +1

Query: 706 PTPXRXXXXXXXXPNPXPPXXP----PPXTPAPXXXXGXXXPPPXP 831
           P P          P P PP  P    PP  P P    G   PPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +1

Query: 745 PNPXPPXXPPPXTPAPXXXXGXXXPPPXPXXGXXGGPXXQXPGXGGAP 888
           P P     PPP  P      G   PPP P     GG     P     P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 752 PPPPXXRXPKPRPXXXXXGXPXPPPXPXXGXXVGPXP 862
           P P     P P P     G P PPP P      GP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVA-GAGPPP 777



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +1

Query: 745 PNPXPPXXPPPXTPAPXXXXGXXXPPPXPXXGXXGGPXXQXP 870
           P P P   P P  PAP    G   PPP P     G P    P
Sbjct: 742 PTPAPAPIPVPP-PAPIMG-GPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
 Frame = +1

Query: 760 PXXPPP----XTPAPXXXXGXXXPPPXPXXGXXGGPXXQXPGXGGAPXGXP 900
           P  PPP     TPAP        PPP P     GGP    P  G A  G P
Sbjct: 732 PPPPPPAVIVPTPAPAP---IPVPPPAP---IMGGPPPPPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 486 SPRPLXGXXRPP-PXXGXXXPPPPXPG 563
           +P P      PP P  G   PPPP PG
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
 Frame = +3

Query: 489 PRPLXGXXRPPPXX----GXXXPPPPXP 560
           P P+ G   PPP      G   PPPP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 757 PPXXPPPXTPAPXXXXGXXXPPPXP 831
           PP  PPP  P P        PPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 417 PPTPXGGXGGXXGAFPGXGXG 479
           PP   GG G   G FPG G G
Sbjct: 78  PPGAEGGPGAGFGGFPGAGPG 98


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 752  PPPPXXRXPKPRPXXXXXGXPXPPPXP 832
            PPPP    P P       G P  PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +1

Query: 745  PNPXPPXXP-PPXTPAPXXXXGXXXPPPXPXXGXXGGPXXQXPGXGGA 885
            P P PP    PP   AP    G    PP P       P    PG   A
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA-SSAPSVPNPGDRSA 1751



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
 Frame = +2

Query: 749  TPPPPXXRXPKPRPXXXXXGXP---XPPPXPXXGXXVGPXP 862
            TPPPP    P P         P    PPP P       P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
 Frame = -1

Query: 851 PPXXPFXGX--GGGXXSPXXXX--GAGVXGGGXXGGXG 750
           PP  P  G   GGG   P      G G  GGG  GG G
Sbjct: 101 PPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRG 138


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = -1

Query: 899 GXPXGAPPXPGXWXXGPPXXPFXGXGGGXXSPXXXXGAGVXGGGXXGGXGFG 744
           G P G    PG +  GP      G GGG        G G  GGG  G  G G
Sbjct: 228 GGPGGFEGGPGGFGGGP-----GGFGGGLGG--FGGGPGGFGGGPGGHGGPG 272


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/50 (26%), Positives = 13/50 (26%)
 Frame = +2

Query: 713 RXGXPXXXXXXQTPPPPXXRXPKPRPXXXXXGXPXPPPXPXXGXXVGPXP 862
           R   P        PP      P   P     G P  PP P       P P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,783
Number of Sequences: 5004
Number of extensions: 20716
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)