Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_A16
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical pr... 90 2e-18
AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical ... 90 2e-18
Z83228-6|CAB05736.1| 241|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 28 7.7
Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 28 7.7
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 28 7.7
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 28 7.7
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical
protein R166.2 protein.
Length = 618
Score = 89.8 bits (213), Expect = 2e-18
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 10/130 (7%)
Frame = +2
Query: 344 VYFITSM----FRQPSAPKTDIN-NPSSAPRA-PAVNMFANGTILDMYCYLSEQEFN-TN 502
+YF+ SM FR S+P D N S+A A+NMF N I D+Y Y+ + +
Sbjct: 33 IYFVVSMVSGFFRPSSSPGNDGNVTASTAGNGNKAMNMFPNHQIFDLYVYMDDSDLPFRQ 92
Query: 503 FDNS--NLIWQHSGLVYGDWYSGPNGDGSYS-HSASITPSFALKNNGSIYLHVYIVPSGK 673
FD++ LIW +G+ Y DW SG N DGS++ H TP+ AL N S++LH +IV +G+
Sbjct: 93 FDSAPEKLIWMRNGMKYDDWISGDNEDGSHTIHKNFPTPA-ALLRNDSLWLHTFIVKAGQ 151
Query: 674 SPDPNNRQNF 703
SP+P +R F
Sbjct: 152 SPNPKDRNYF 161
>AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical
protein C36B7.6 protein.
Length = 602
Score = 89.8 bits (213), Expect = 2e-18
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Frame = +2
Query: 347 YFITSMFRQPSAPKTDINNPSSAP---RAPAVNMFANGTILDMYCYL--SEQEFNTNFDN 511
YFI++M + ++ N+ ++A P+VN+F G I D Y YL SE+ FN +F+N
Sbjct: 39 YFISTMLGKMGGSQSKTNSTAAANVKGMPPSVNLFPPGQIYDFYLYLDDSEERFN-HFEN 97
Query: 512 SNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSIYLHVYIVPSGKSPDPNN 691
L Q GL YGDW GPN DGSY + L N S YLH ++V +G+SP+P +
Sbjct: 98 GFLFAQKKGLRYGDWTGGPNKDGSYVFEKTFPTPEVLLRNQSYYLHAFLVKNGQSPNPAD 157
Query: 692 R 694
+
Sbjct: 158 K 158
>Z83228-6|CAB05736.1| 241|Caenorhabditis elegans Hypothetical
protein F52F12.7 protein.
Length = 241
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 572 GDGSYSHSASIT-PSFALKNNGSIYLHVYIVPSGKSPDPNN 691
GDG S S+T PSF K+ G + H+++ + P+P N
Sbjct: 149 GDGFILASRSVTVPSFKSKHKGKVRAHLHLAGARFRPNPEN 189
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 503 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 640
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 439
>Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical
protein T22H2.2 protein.
Length = 527
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 214 SVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLIIRAL 339
S++ DDN D++++ R PT + ++ +T ++I +L
Sbjct: 195 SLLTDDDNKDVSSKSNTHSERCDPTTIIAYLLLTGLVLITSL 236
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 503 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 640
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 439
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 503 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 640
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 298 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 339
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 503 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 640
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 439
>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
protein K09F6.6 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +1
Query: 232 DNLDINARVEEERRRMQPTKLESFFAITKSLIIRALXSLFYYFYV*TAICSKNRYQ*SI* 411
++LD + ++E RR + E+ ++ KS RAL S+ Y Y + + +Y
Sbjct: 892 ESLDCSEPIDEIMRRREGR--ENAKSVFKSAFSRALKSVRAYHY--DLVTNTLKY----- 942
Query: 412 CPKSTSCEYVCKWNYTRH 465
C + +C+ WN RH
Sbjct: 943 CEERNTCKDHLSWNQVRH 960
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,879
Number of Sequences: 27780
Number of extensions: 362840
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -