Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A13
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.073
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.096
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    32   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.68 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 546 PPXPAPXXPARXPXXPFXLPPXPGXXPPXP 457
           PP  AP  P+  P  P   PP P   PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -1

Query: 546 PPXPA--PXXPARXPXXPFXLPPXPGXXPPXPPP 451
           PP P+  P  PA  P  P   PP P   PP   P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 546 PPXPAPXXPARXPXXPFXLPPXPGXXPPXP 457
           P  PAP  P      P   PP P   PP P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSP 154



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
 Frame = -1

Query: 546 PPXPAPXXPARXPXXPFXLPP----XPGXXPPXPP 454
           PP P+   P   P  P   PP     P   PP PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
 Frame = -1

Query: 555 PXGPPXPAP----XXPARXPXXPFXLPPXPGXXPPXP 457
           P  P  P P      P   P  P   PP P   PP P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXP 457
           P  P  P    P+  P  P  +PP P   PP P
Sbjct: 174 PAQPAAPVKSPPSA-PSLPSAVPPMPPKVPPPP 205


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
 Frame = +2

Query: 452 GGGXGGXXPGXGG----RXXGXXGXRAGXXGAGXGGPXGXRXPP 571
           GGG GG  PG GG       G  G   G  G   GGP G    P
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +2

Query: 452 GGGXGGXXPGXGGRXXGXXGXRAGXXG--AGXGGPXG 556
           GGG GG   G GG   G  G   G  G   G GG  G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 455 GGXGGXXPGXGGRXXGXXGXRAGXXGAGXGGPXG 556
           GG GG   G GG   G  G   G  G G GG  G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGF-GGGPGGHGG 270



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/79 (26%), Positives = 21/79 (26%)
 Frame = -2

Query: 860 GXGXGPXGXXXXXXXGXPXGXXPPPXXGGXXXGXXXXGXGXXGXGXXXPXPXRXXXPPXX 681
           G G G  G         P G       GG        G    G G     P      P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 680 XVXGXGXAXGXPXXXGGGP 624
              G G   G P   GGGP
Sbjct: 247 FGGGLGGFGGGPGGFGGGP 265


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 18/35 (51%), Positives = 18/35 (51%)
 Frame = +2

Query: 452 GGGXGGXXPGXGGRXXGXXGXRAGXXGAGXGGPXG 556
           GGG GG   G GGR  G  G R G  G G GG  G
Sbjct: 37  GGGRGGARGGRGGR-GGARGGRGGSSG-GRGGAKG 69


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -1

Query: 546 PPXPAPXXPARXPXXPFXLPPXP--GXXPPXPPP 451
           PP PA   P   P      PP P  G  PP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXX---PPXPPP 451
           P   P P P  PA     P   PP PG     PP PPP
Sbjct: 744 PAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXPPP 451
           P   P PAP      P  P       G  PP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXPP 454
           P  PP P    P   P  P      P   PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -1

Query: 573 GGGXRXPXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXPPP 451
           G G      PP P P  P         LPP     PP PPP
Sbjct: 328 GNGSSNSSLPPPPPP--PRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXPP 454
           P  PP   P  P   P      PP P   P  PP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXPP 454
           P  P  P    P+  P  P  LP      PP PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = -1

Query: 555 PXGPPXPAPXXPARXPXXPFXLPPXPGXXP--PXPPP 451
           P  PP P P  P   P  P  +P  P   P  P PPP
Sbjct: 444 PAAPPLP-PSAPIAPPL-PAGMPAAPPLPPAAPAPPP 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 537  PAPXXPARXPXXPFXLPPXPGXXPPXPPP 451
            P P  P      P   PP P   P  PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 455 GGXGGXXPGXGGRXXGXXGXRAGXXGAGXGGP 550
           GG GG     GGR  G  G R+G    G   P
Sbjct: 460 GGFGGRGGFGGGRGRGRGGARSGNPNRGSVAP 491


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = -1

Query: 546  PPXPAPXXPARXPXXPFXLP--PXPGXXPPXPPP 451
            PP PAP      P      P  P P   PP P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
 Frame = -1

Query: 546  PPXPAPXXPARXPXXPFXLPPXP---GXXPPXPPP 451
            PP PAP      P      PP P      PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 555  PXGPPXPAPXXPARXPXXPFXLPPXPGXXPPXPPP 451
            P  PP  AP  P      P  +PP P   PP P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVP-PVPP-PSTAPPVPTP 1222


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 510 PXXPFXLPPXPGXXPPXPPP 451
           P  P   PP PG  PP  PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,810
Number of Sequences: 5004
Number of extensions: 18717
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)