Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A12
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 504 KNEKVQEALQLLDKFLERSEVRGRTEPHRRRP 599
           ++ ++QE    LDKFL+ + ++   EP RR P
Sbjct: 28  RDAEIQELRSHLDKFLQCASLKLAFEP-RRNP 58


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 555 FRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLEHE 394
           +R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+L  E
Sbjct: 282 YRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 555 FRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLEHE 394
           +R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+L  E
Sbjct: 282 YRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 555 FRGTCPAAEGLPVPSRSWPCRLGHRRILGDRNNH*ISGTK-FRCRNTTVGQLEHE 394
           +R  CP    +P+ + + PC    R   G   N+ ++  +  +   T +G+L  E
Sbjct: 282 YRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEE 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,505
Number of Sequences: 438
Number of extensions: 4417
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)