Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_A05
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    28   2.0  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    26   6.2  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   8.2  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 187 ELLWGARQRI--NFLFY*ILKMNLSDPDRRRYVR 92
           E+L+ + + +  N +FY  + ++LSD DR+R VR
Sbjct: 879 EILYSSEEEMPSNVIFYETMDVSLSDLDRKRLVR 912


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 298 WNAWLVLWPHKSLQSAFPVI-FLFIARTIFAERMASGCELLW 176
           + AW+V     SL   FP+  FLFIA   F E + +   LLW
Sbjct: 46  YKAWIVCTTI-SLCCDFPLFNFLFIAIPYFTEILYNDSSLLW 86


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 143 IKQEINSLPCSPKKFTS*SHSFCKDGSSY 229
           IK  +NSL C+P    S   +F +   SY
Sbjct: 278 IKSSLNSLECNPSNLLSVRKNFQQSSDSY 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,934
Number of Sequences: 5004
Number of extensions: 50232
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)