Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P24
         (937 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A0E6 Cluster: diaphanous protein; n=1; Entamoe...    34   4.5  
UniRef50_Q9U2W6 Cluster: Putative uncharacterized protein psa-1;...    34   6.0  
UniRef50_Q18756 Cluster: Collagen sequence x-hybridizing protein...    33   7.9  

>UniRef50_UPI000049A0E6 Cluster: diaphanous protein; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: diaphanous protein -
           Entamoeba histolytica HM-1:IMSS
          Length = 1176

 Score = 34.3 bits (75), Expect = 4.5
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 564 PPXGVTNRXXXTPPXG--GXPXSPHPXGXPXRPXPXPXG 454
           PP G+       PP G  G P  P P G P  P P P G
Sbjct: 633 PPPGMPGMPPPPPPPGMPGMPPPPPPPGMPGMPPPPPPG 671


>UniRef50_Q9U2W6 Cluster: Putative uncharacterized protein psa-1;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein psa-1 - Caenorhabditis elegans
          Length = 789

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 23/91 (25%), Positives = 28/91 (30%)
 Frame = +1

Query: 619 RGXDYXQKXPXPGXXWXNPXXXPPCXNSTXXXPQSFXXXPPPXXXNXPRGPPLXXPGXRX 798
           +G  Y    P PG  +  P   PP         Q +   PPP        PP   PG   
Sbjct: 685 QGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPG--H 742

Query: 799 XXXXXXGXXGXQXTGXXXXEKXGGGXXXPPG 891
                 G       G    ++  GG   PPG
Sbjct: 743 PYQQPYGQMPPPPHGQYQPQQQQGGPMGPPG 773


>UniRef50_Q18756 Cluster: Collagen sequence x-hybridizing protein 1;
           n=3; Caenorhabditis|Rep: Collagen sequence x-hybridizing
           protein 1 - Caenorhabditis elegans
          Length = 589

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 561 PXGVTNRXXXTPPXGGXPXSPHPXGXPXRPXPXP 460
           P G         P G  P  PHP G P RP P P
Sbjct: 70  PPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHP 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,209,319
Number of Sequences: 1657284
Number of extensions: 6105468
Number of successful extensions: 14013
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13096
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)