Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P24
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    34   0.17 
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    34   0.17 
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    33   0.22 
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    31   1.2  

>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/91 (25%), Positives = 28/91 (30%)
 Frame = +1

Query: 619 RGXDYXQKXPXPGXXWXNPXXXPPCXNSTXXXPQSFXXXPPPXXXNXPRGPPLXXPGXRX 798
           +G  Y    P PG  +  P   PP         Q +   PPP        PP   PG   
Sbjct: 685 QGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPG--H 742

Query: 799 XXXXXXGXXGXQXTGXXXXEKXGGGXXXPPG 891
                 G       G    ++  GG   PPG
Sbjct: 743 PYQQPYGQMPPPPHGQYQPQQQQGGPMGPPG 773


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/91 (25%), Positives = 28/91 (30%)
 Frame = +1

Query: 619 RGXDYXQKXPXPGXXWXNPXXXPPCXNSTXXXPQSFXXXPPPXXXNXPRGPPLXXPGXRX 798
           +G  Y    P PG  +  P   PP         Q +   PPP        PP   PG   
Sbjct: 685 QGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPG--H 742

Query: 799 XXXXXXGXXGXQXTGXXXXEKXGGGXXXPPG 891
                 G       G    ++  GG   PPG
Sbjct: 743 PYQQPYGQMPPPPHGQYQPQQQQGGPMGPPG 773


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 561 PXGVTNRXXXTPPXGGXPXSPHPXGXPXRPXPXP 460
           P G         P G  P  PHP G P RP P P
Sbjct: 70  PPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHP 103


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/60 (35%), Positives = 22/60 (36%)
 Frame = -2

Query: 936 PXRGVGXANPGXLXXPGGXXXTPPPFFXXXXPGXLXPXXPXXXXXGGPGPGXX*GGAPGG 757
           P +G G   PG    PG      P       PG   P  P     GGPG     GG PGG
Sbjct: 287 PGQG-GPGMPGSFP-PGAPGPGGPGMPGSFAPGAPGPGGPGGYPSGGPGMPGMQGGYPGG 344



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = -2

Query: 924 VGXANPGXLXXPGGXXXTPPPFFXXXXPGXLXPXXPXXXXXGGPGPGXX*GGAPGG 757
           V    PG    PG      P  F    PG   P  P     G PGPG   GG P G
Sbjct: 277 VAPGMPGAFP-PGQGGPGMPGSFPPGAPGPGGPGMPGSFAPGAPGPGGP-GGYPSG 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,117
Number of Sequences: 27780
Number of extensions: 170399
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)