Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P23
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    30   0.54 
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    27   2.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.8  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 248 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHREYERYHPMPHNWFY 105
           G++++ +D E  LA   +R PW +A     RGH  Y   +  P+  FY
Sbjct: 462 GKIIEGNDVEGVLA---IRSPWPSAARTVWRGHDRYIDTYLKPYPGFY 506


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 93  QSKRETRLNNPTAKHQNLKEFHY 25
           QS  E  L+N  +  QNLK+FHY
Sbjct: 308 QSSTEKFLSNTLSAVQNLKDFHY 330


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
 Frame = -3

Query: 610 YTPHSTK*APTTFPEVCLKGLFFSPIE*SRGLKWLPSVSATTISTPSLELHPSELQSSTC 431
           YTP ST+ +    P      +  S    S  ++   S S+ + S P      S L SST 
Sbjct: 128 YTPSSTESSSLLDPSSVSSAILPS----STSVEVSISSSSLSSSDPLTSSTFSSLSSSTS 183

Query: 430 IWYLPPFFTLKAADVALPAPLQT--SFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL 257
               P   +  ++  +  AP  T  S+LSS ++  S++SP  +   T TS  S L TS +
Sbjct: 184 SSQ-PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTS--SSLSTSSI 240

Query: 256 *AVAAWLTSTIANVRS 209
            + ++  +ST +++ S
Sbjct: 241 PSTSSSSSSTSSSLSS 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,689
Number of Sequences: 5004
Number of extensions: 58627
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)