Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P23
         (933 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    29   4.0  
07_03_0698 - 20765305-20768526                                         29   7.0  
02_03_0099 + 15206282-15206917                                         29   7.0  
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204     28   9.2  

>04_04_1694 -
           35419278-35419565,35419744-35419861,35420404-35420490,
           35420909-35420931,35421647-35421843,35421964-35422159,
           35422382-35422481,35423288-35423374,35424053-35424282,
           35424678-35424763,35425148-35425271,35425415-35428573,
           35430014-35430019
          Length = 1566

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +3

Query: 354 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 521
           ++E+WSGA    SA  K KK  +    ++    DG  S       VEIV+     + L  
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676

Query: 522 LDYSIGEKN 548
           ++ S  E N
Sbjct: 677 VELSFAENN 685


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 584 RLLRRMGCVSXKVPVDRVPVPNLTHLLYGFIPICGGDGINDSFE 715
           RLL  +     +V V    +P L HLL G I +C G  I  S E
Sbjct: 778 RLLETLDIRGTRVQVFHTALPMLKHLLAGCIIVCPGKDIVKSKE 821


>02_03_0099 + 15206282-15206917
          Length = 211

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 336 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 503
           +R++++  +  + A +ATS A      + GGRY + +   ++   S++E  E+VV + D
Sbjct: 38  ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96


>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
          Length = 546

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -2

Query: 248 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHREYERYHPMP 120
           GR  D DD  R   P   R+P   +G  G  G RE   +   P
Sbjct: 191 GRSDDIDDWSRDKKPMPSRYPSLGSGGGGGGGFRESPGFRDSP 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,168,137
Number of Sequences: 37544
Number of extensions: 434950
Number of successful extensions: 1250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)