Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_P20
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.008
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.73
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.9
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 5.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.008
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 639 PPPPPXXXGGGXPPPPP 689
PPPPP G G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 33.5 bits (73), Expect = 0.034
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 640 PPPPPPXXGGGXPPPP 687
PPPPPP G PPPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778
Score = 33.1 bits (72), Expect = 0.045
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 639 PPPPPXXXGGGXPPPPP 689
PPPPP G PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +2
Query: 485 PPPKXXGFFFXXXXGXXFFXPPPPXXXGGPPPXXXGGXXKKXXXXXXXXXXXPPPPXXXG 664
PPP PPP GGPPP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP--------------------PPPPPGVA 771
Query: 665 GGGXPPPP 688
G G PPPP
Sbjct: 772 GAGPPPPP 779
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 639 PPPPPXXXGGGXPPPPP 689
P PPP GG PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 639 PPPPPXXXGGGXPPPPPXFXG 701
PPP P G PPPPP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +1
Query: 550 PPXLXXGPPPPXXGGXXXKXXXXXXXXXXXPPPPPP 657
P + PP P GG PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 547 PPPXLXXGPPPPXXGGXXXKXXXXXXXXXXXPPPPPPXXGGG 672
PP + GPPPP PPPPPP G
Sbjct: 753 PPAPIMGGPPPPPP------PPGVAGAGPPPPPPPPPAVSAG 788
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.73
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 639 PPPPPXXXGGGXPPPPP 689
PPPPP PPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Frame = +3
Query: 639 PPPPPXXXGGGXP--PPPPXFXGXXXK 713
PPPPP G P PPPP G K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Frame = +1
Query: 640 PPPPPPXXG---GGXPPPP 687
PPPPPP G PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Frame = +1
Query: 547 PPPXLXXGPPPPXXGGXXXKXXXXXXXXXXXPPPPPP---XXGGGXPPPP 687
PPP PPPP PPPPPP G P PP
Sbjct: 311 PPP-----PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Frame = +1
Query: 571 PPPPXXGGXXXKXXXXXXXXXXXPPPPPP--XXGGGXPPPP 687
PPPP PPPPPP G PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 686 GGGGXPPPXXGGGGG 642
GG G PPP GG GG
Sbjct: 195 GGSGGPPPGPGGFGG 209
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 642 PPPPXXXGGGXPPP 683
PPPP G G PPP
Sbjct: 129 PPPPAGFGRGAPPP 142
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 643 PPPPPXXGGGXPPP 684
PPPP G G PPP
Sbjct: 129 PPPPAGFGRGAPPP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,123
Number of Sequences: 5004
Number of extensions: 36343
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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