Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_P19
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 55 1e-08
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 40 5e-04
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 40 5e-04
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 36 0.010
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 35 0.014
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.67
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 2.1
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 3.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 3.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.6
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 27 3.6
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 4.8
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 6.3
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 6.3
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 8.3
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 8.3
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 55.2 bits (127), Expect = 1e-08
Identities = 37/114 (32%), Positives = 50/114 (43%)
Frame = +1
Query: 202 ITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSLPKLRILNVSLNKLYNL 381
I RL+L HN I + P SL L L IL++S NK+ L
Sbjct: 54 IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQL 113
Query: 382 PRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN 543
P FG+ L++L ++ N L E LP M +L L + +N F PP I N
Sbjct: 114 PESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENNHIVFPPPHIAN 165
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 39.9 bits (89), Expect = 5e-04
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +1
Query: 313 PVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRA 492
P S L L L++S N P LE L+ ++N L++ + + L+
Sbjct: 518 PHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQ--ISSKIGSLVKLKH 575
Query: 493 LYLGDNDFEF-LPPEIGNLKNLQILSMRENDLIEV 594
LYL ND LP EIG LKNL+ + + N + +
Sbjct: 576 LYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNI 610
Score = 39.1 bits (87), Expect = 8e-04
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 313 PVSLSSLPK--LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL 486
P+ S L + L+ LN++ NKL+ LP L LDL+YNN P + L
Sbjct: 493 PLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQL 550
Query: 487 RALYLGDNDFEFLPPEIGNLKNLQILSMRENDL 585
L N + +IG+L L+ L ++ NDL
Sbjct: 551 ETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDL 583
Score = 33.5 bits (73), Expect = 0.041
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 1/145 (0%)
Frame = +1
Query: 124 NNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNK-ISVVPXXXXXXXXXXXXXXXXXX 300
+NP +D L I FS N+ +SH K I +
Sbjct: 635 SNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNH 694
Query: 301 XXXXPVSLSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMD 480
++S++ L+ L+ + ++ + G L LDL NN+ K+ P + +
Sbjct: 695 FTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNI--KIFPEEVWQVS 752
Query: 481 SLRALYLGDNDFEFLPPEIGNLKNL 555
SL+ + L N E + + K L
Sbjct: 753 SLKVVNLSSNILEKIKLPVATSKKL 777
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 463 NFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIEVPGSWG 609
+ F L LY+ N+ LPPEIG LKNL IL N + +P G
Sbjct: 176 DLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELG 224
Score = 33.5 bits (73), Expect = 0.041
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 600 ELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 725
ELG L LRE+ L N + V+P E+GTL +L +EGN
Sbjct: 222 ELGLLTELREVLLFDNMISVIPAELGTL---FQLKILGIEGN 260
Score = 32.7 bits (71), Expect = 0.072
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 370 LYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLK 549
L N+ F L L + +NNL LP + +L L N + +PPE+G L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 550 NLQILSMRENDLIEVPGSWGS 612
L+ + + +N + +P G+
Sbjct: 228 ELREVLLFDNMISVIPAELGT 248
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 594 SRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 725
S +L + + L EL++ N L LPPEIG L N +L GN
Sbjct: 174 STDLFKFSFLTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214
Score = 29.5 bits (63), Expect = 0.67
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +3
Query: 537 WKFEESTNFVDARERPDRSSRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRL 716
+KF T R E+G+L L L GN + +PPE+G L + VL
Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGL--LTELREVLLF 235
Query: 717 EGNFWVPPIE 746
+ V P E
Sbjct: 236 DNMISVIPAE 245
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 35.5 bits (78), Expect = 0.010
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 406 VLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN-LKNLQILSMREND 582
V + +D T N++ GNF M L+ L G+N + P+IG L NL+ LS+ +N
Sbjct: 42 VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNH 98
Query: 583 LIEV 594
L E+
Sbjct: 99 LQEI 102
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 35.1 bits (77), Expect = 0.014
Identities = 31/87 (35%), Positives = 41/87 (47%)
Frame = +1
Query: 322 LSSLPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYL 501
+SSL L +L + NKL NL S P++ + L +N L + F LR LY+
Sbjct: 753 ISSLQNLMVLQLDNNKLTNLK---ASQPMIHLRILRISNNAIHQLEVDQF--PHLRTLYM 807
Query: 502 GDNDFEFLPPEIGNLKNLQILSMREND 582
N F PP+I LK L S R D
Sbjct: 808 DLNRFN-RPPDIRRLKRLVNFSFRTQD 833
Score = 29.9 bits (64), Expect = 0.51
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 2/150 (1%)
Frame = +1
Query: 154 GISSLEEIPGLFSLENITRLSLSHNKISVVPXXXXXXXXXXXXXXXXXXXXXXPVSLSSL 333
G + +EEI + SL+N+ L L +NK++ + +
Sbjct: 743 GNNEIEEIEEISSLQNLMVLQLDNNKLT---NLKASQPMIHLRILRISNNAIHQLEVDQF 799
Query: 334 PKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSL--RALYLGD 507
P LR L + LN+ +N P + +++ ++ + + NF I SL R LYL +
Sbjct: 800 PHLRTLYMDLNR-FNRPPDIRR--LKRLVNFSFRTQDPEA--SNFVIQPSLDIRNLYLSN 854
Query: 508 NDFEFLPPEIGNLKNLQILSMRENDLIEVP 597
N F L + L ++ L + L EVP
Sbjct: 855 NTFVTLDCKHMFL-GVRYLELANVQLKEVP 883
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 233 ILLWLRDRRVMFSRENKPGISSRLDIPLSTKSI 135
IL W+ + MFSR+ P ++S L +P K I
Sbjct: 89 ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 188 NKPGISSRLDIPLSTKSISGLFISLASSITFLAFDILPVF 69
NKP D+ S +G+F SL T+ A D LP +
Sbjct: 201 NKPAYFGSKDLKQSAPLFTGIFSSLDDIPTYSASDYLPAY 240
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 493 KHGDCP**RSSQVILFHSNYCMLDPIS 413
+HG P SS ++ ++ NYC P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 3.6
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = -2
Query: 605 QLPGTSI-RSFSRIDKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFP-GNTFS---F 441
QL SI S +DK+ K+ + + YK +R SI++KFP N S
Sbjct: 145 QLTNISILNSLDNLDKV----KYLLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIH 200
Query: 440 KLLYVRSNISSTGKEPKPLGKLYSLFNETLRILN 339
LL + + T K+ + L ++ N +L +L+
Sbjct: 201 SLLIKSISYAQTEKQEAKVTPLLAIINMSLVLLS 234
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +1
Query: 400 FPVLEILDLTYNNLNEKVLPGNFFIM----DSLRALYLGDNDFEFLPPEIGNLKNLQILS 567
FP+LE+ + L + + G F+ ++L+ L ++ ++ L + Q L
Sbjct: 931 FPLLELYKFSCQQLQDYIAEGKDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLM 990
Query: 568 MRENDLIEVPGSWGSWR 618
M+ ++ G W WR
Sbjct: 991 MKTFARLQAKGDWYEWR 1007
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 416 ISSTGKEPKPLGKLYSLFNETLRILNLGSDDK 321
I STG++PK LGK Y E + I N+ D K
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI-IANVNFDRK 238
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 358 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 462
S KL+++ + FG F VLE + Y L E+ + G
Sbjct: 81 SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 665 RQHDEAVPLQMQLAEARQLPQLPGTSIRSFSRIDK 561
R+H E +PL +L + L + +S+++ S I K
Sbjct: 804 RKHSEGIPLAFKLLDTLNLQNVGDSSVKALSIIIK 838
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 635 MQLAEARQLPQLPGTSIRSFSRIDKICRFFKFPISGGRNSK 513
+Q RQL QLP + S+SR + R P G R +
Sbjct: 324 LQATFERQLKQLPSAYVTSYSRPGRRPRSMTAPKGGARTRR 364
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 684 DLASNK-SVLRLEGNFWVPPIEXQLKLGASHVL 779
+LA K ++L ++ F PPI+ L LGA +V+
Sbjct: 175 ELAKKKGAILVVDSTFAPPPIQDALVLGADYVV 207
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 686 VQCSDLRRQHDEAVPLQMQLAEARQLPQLPGTSIRSFSRIDKICR 552
+ + R+HD V ++ AEARQL +RS I K+CR
Sbjct: 365 LDAKSIERRHD-LVSALVEDAEARQLLLDDDHLLRSIPDIPKLCR 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,603
Number of Sequences: 5004
Number of extensions: 64147
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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